Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5552

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356341 to 358990 13919 mRNA_5552: 13920 - K03360 GRR1 F-box and leucine-rich repeat protein GRR1, at 359863 to 362993 13920 mRNA_5553: 13921 - K20791 NAA10_11, ARD1_2 N-alpha-acetyltransferase 10/11, at 363195 to 364083 13921

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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358,902 + 0.4
358,948 + -0.2
359,030 - 0.3
359,039 - 1.1
359,049 - -1.0
359,056 - 1.1
359,069 + 1.5
359,121 - 0.2
359,207 - 0.0
359,213 - 0.2
359,223 - 0.7
359,332 - 2.3
359,459 - -0.1
359,479 + 0.5
359,609 + -0.0
359,627 + 2.7
359,627 - 1.2
359,771 + 2.9
362,355 + 13920 mRNA_5552 0.80 0.8
362,381 + 13920 mRNA_5552 0.80 1.0
362,774 + -0.4
362,831 - 0.4
363,094 - -2.3