Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5550

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5550: 13918 - K09424 REB1 Myb-like DNA-binding protein REB1, at 353365 to 355997 13918 mRNA_5551: 13919 - ProSitePatterns-Tyrosine protein kinases specific active-site signature.-PS00109,SUPERFAMILY--SSF56112, at 356341 to 358990 13919

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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352,410 + 0.0
352,428 + -0.8
352,566 + -1.1
352,749 + 2.4
352,864 + 0.7
352,922 - 0.1
352,950 + 1.1
352,987 - 0.2
353,880 - 13918 mRNA_5550 0.20 -2.3
356,186 + -0.0
356,263 - 0.7
356,278 - -0.0
356,638 + 13919 mRNA_5551 0.11 -0.7
356,649 - 13919 mRNA_5551 0.12 0.2
356,914 + 13919 mRNA_5551 0.22 -0.2