Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5549

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5548: 13916 - KOG4006 Anti-proliferation factor BTG1/TOB, at 346631 to 348391 13916 mRNA_5549: 13917 - K00027 ME2, sfcA, maeA malate dehydrogenase (oxaloacetate-decarboxylating), at 349196 to 351953 13917

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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348,259 + 2.7
348,390 + 0.1
348,436 + -1.7
348,561 - 1.3
348,592 + -2.1
348,705 - -0.4
348,713 - 4.2
348,723 + 0.9
348,727 + -0.2
348,727 + 0.2
348,730 + 0.9
348,730 - -0.4
348,730 + 1.7
348,733 - 0.9
348,735 - 3.0
348,739 - 0.6
348,875 - -1.5
348,877 - 0.1
348,896 - 1.4
349,034 - -0.2
349,045 - 2.0
349,148 + 0.8
349,164 + 0.5
349,171 + -1.1
349,177 - 0.7
349,186 + -0.7
349,309 - 0.7
349,320 + 1.2
349,468 + -0.9
349,749 - 13917 mRNA_5549 0.20 2.1
349,756 + 13917 mRNA_5549 0.20 -0.0
349,769 - 13917 mRNA_5549 0.21 0.2
350,057 - 13917 mRNA_5549 0.31 0.4
350,190 - 13917 mRNA_5549 0.36 0.1
350,616 + 13917 mRNA_5549 0.51 -1.0
350,805 - 13917 mRNA_5549 0.58 -0.2
351,065 - 13917 mRNA_5549 0.68 -1.2
351,118 - 13917 mRNA_5549 0.70 0.7
351,261 + 13917 mRNA_5549 0.75 0.8
351,346 + 13917 mRNA_5549 0.78 -0.7
352,155 + -0.1
352,410 + 0.0
352,428 + -0.8
352,566 + -1.1
352,749 + 2.4
352,864 + 0.7
352,922 - 0.1
352,950 + 1.1