Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5543

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5542: 13910 - Hypothetical Protein, at 336976 to 338321 13910 mRNA_5543: 13911 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 338637 to 339590 13911 mRNA_5544: 13912 - Hypothetical Protein, at 340231 to 341133 13912

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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337,866 - 13910 mRNA_5542 0.66 0.8
337,883 + 13910 mRNA_5542 0.67 0.9
338,309 + -0.1
338,315 - -1.1
338,320 - 0.5
338,330 + 1.8
338,339 + 1.5
338,342 + -1.6
338,346 + 0.3
338,480 - -0.4
338,488 - 0.9
338,490 - 0.1
338,894 - 13911 mRNA_5543 0.27 -1.5
339,031 - 13911 mRNA_5543 0.41 -1.5
339,220 + 13911 mRNA_5543 0.61 -0.6
339,629 - -1.1
339,636 - 1.5
339,650 + 0.8
339,677 + 0.5
339,765 - -0.1
339,786 + 2.3
339,796 - -0.8
339,802 + 0.0
339,806 + 0.5
339,815 + 0.6
339,871 - 0.3
339,878 + -0.2
339,897 + 0.3
339,963 - 0.9
339,975 + 1.0
339,986 + -0.9
340,003 + 2.0
340,003 - -0.4
340,084 - 1.7
340,125 - 2.0
340,233 + 0.9
340,234 - -2.2
340,236 + 2.6
340,243 - 0.1
340,380 + 13912 mRNA_5544 0.17 1.1
340,528 + 13912 mRNA_5544 0.33 1.6
340,551 + 13912 mRNA_5544 0.35 -2.0