Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5542

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5541: 13909 - K02482 K02482 two-component system, NtrC family, sensor kinase, at 333432 to 336799 13909 mRNA_5542: 13910 - Hypothetical Protein, at 336976 to 338321 13910 mRNA_5543: 13911 - K15190 MEPCE, BCDIN3 7SK snRNA methylphosphate capping enzyme, at 338637 to 339590 13911

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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335,996 - 13909 mRNA_5541 0.76 2.8
336,027 - 13909 mRNA_5541 0.77 1.1
336,279 - 13909 mRNA_5541 0.85 0.1
336,469 - 1.5
336,621 - -0.2
336,625 + 0.1
336,705 + -0.6
337,012 - 2.3
337,205 - 13910 mRNA_5542 0.17 2.3
337,213 + 13910 mRNA_5542 0.18 1.1
337,320 - 13910 mRNA_5542 0.26 2.3
337,354 - 13910 mRNA_5542 0.28 -2.2
337,501 - 13910 mRNA_5542 0.39 -0.1
337,508 + 13910 mRNA_5542 0.40 0.3
337,866 - 13910 mRNA_5542 0.66 0.8
337,883 + 13910 mRNA_5542 0.67 0.9
338,309 + -0.1
338,315 - -1.1
338,320 - 0.5
338,330 + 1.8
338,339 + 1.5
338,342 + -1.6
338,346 + 0.3
338,480 - -0.4
338,488 - 0.9
338,490 - 0.1
338,894 - 13911 mRNA_5543 0.27 -1.5
339,031 - 13911 mRNA_5543 0.41 -1.5
339,220 + 13911 mRNA_5543 0.61 -0.6