Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5539

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5538: 13906 - Hypothetical Protein, at 327452 to 328556 13906 mRNA_5539: 13907 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 328856 to 330220 13907 mRNA_5540: 13908 - Interpro GDP-fucose protein O-fucosyltransferase, at 330944 to 333027 13908

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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327,904 - 13906 mRNA_5538 0.41 -0.4
327,938 - 13906 mRNA_5538 0.44 0.3
327,961 + 13906 mRNA_5538 0.46 1.8
327,963 - 13906 mRNA_5538 0.46 -0.4
328,079 - 13906 mRNA_5538 0.57 -0.8
328,079 - 13906 mRNA_5538 0.57 -0.1
328,138 - 13906 mRNA_5538 0.62 0.5
328,245 + 13906 mRNA_5538 0.72 1.2
328,251 + 13906 mRNA_5538 0.72 -1.3
328,270 - 13906 mRNA_5538 0.74 -0.9
328,524 - 0.1
328,535 + 3.1
328,537 + -0.7
328,540 - -0.4
328,546 - 0.8
328,690 + -1.3
329,242 + 13907 mRNA_5539 0.28 -1.7
329,267 - 13907 mRNA_5539 0.30 -1.1
329,597 - 13907 mRNA_5539 0.54 -0.2
329,604 - 13907 mRNA_5539 0.55 0.9
329,708 - 13907 mRNA_5539 0.62 0.7
329,859 + 13907 mRNA_5539 0.73 -0.9
329,996 + 13907 mRNA_5539 0.84 2.8
330,435 + -0.5
330,445 - -0.7
330,574 - -0.9
330,579 - 1.3
330,580 + 0.2
330,589 - 0.8
330,728 + 1.1
330,737 - 0.2
330,753 + 2.4
330,753 + 0.2
330,761 + -0.4
330,861 - 1.7
330,870 - 0.7
330,897 - -1.3
331,024 - 0.9