Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5538

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5537: 13905 - K14766 NOP14, UTP2 nucleolar protein 14, at 323661 to 327159 13905 mRNA_5538: 13906 - Hypothetical Protein, at 327452 to 328556 13906 mRNA_5539: 13907 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 328856 to 330220 13907

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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327,182 + 0.0
327,240 + 1.5
327,241 - 0.9
327,243 + 0.7
327,492 + -0.7
327,519 - -1.2
327,546 - 1.5
327,657 - 13906 mRNA_5538 0.19 -0.8
327,823 + 13906 mRNA_5538 0.34 1.9
327,904 - 13906 mRNA_5538 0.41 -0.4
327,938 - 13906 mRNA_5538 0.44 0.3
327,961 + 13906 mRNA_5538 0.46 1.8
327,963 - 13906 mRNA_5538 0.46 -0.4
328,079 - 13906 mRNA_5538 0.57 -0.8
328,079 - 13906 mRNA_5538 0.57 -0.1
328,138 - 13906 mRNA_5538 0.62 0.5
328,245 + 13906 mRNA_5538 0.72 1.2
328,251 + 13906 mRNA_5538 0.72 -1.3
328,270 - 13906 mRNA_5538 0.74 -0.9
328,524 - 0.1
328,535 + 3.1
328,537 + -0.7
328,540 - -0.4
328,546 - 0.8
328,690 + -1.3
329,242 + 13907 mRNA_5539 0.28 -1.7
329,267 - 13907 mRNA_5539 0.30 -1.1