Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5529

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5528: 13896 - HMMPfam-Protein of unknown function (DUF2416)-PF10315, at 305773 to 306425 13896 mRNA_5529: 13897 - K18045 SIW14, OCA3 tyrosine-protein phosphatase SIW14, at 306670 to 307631 13897

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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305,722 - 0.8
305,837 - 0.1
306,006 - 13896 mRNA_5528 0.36 1.3
306,125 - 13896 mRNA_5528 0.54 -2.1
306,134 - 13896 mRNA_5528 0.55 0.6
306,170 + 13896 mRNA_5528 0.61 0.4
306,292 - 13896 mRNA_5528 0.79 0.2
306,315 + 13896 mRNA_5528 0.83 -0.9
306,341 - 13896 mRNA_5528 0.87 0.6
306,432 - 1.0
306,440 + 0.3
306,446 - -0.5
306,452 - 1.2
306,761 + -0.4
306,863 + 13897 mRNA_5529 0.20 0.6
307,175 + 13897 mRNA_5529 0.52 1.1
307,183 + 13897 mRNA_5529 0.53 0.3
307,354 - 13897 mRNA_5529 0.71 -0.4
307,663 + -0.4
307,674 + -0.3
307,768 + 0.1
307,789 - 2.4
307,811 + 0.3
307,907 + 0.8
307,923 + 0.1
308,040 - 0.5
308,075 - 0.6
308,086 + 0.5
308,092 - 0.4
308,095 - 0.1
308,098 + 0.2
308,108 - -0.2
308,218 - 0.3
308,235 - 0.2
308,239 + 1.2
308,420 + 1.8
308,513 - -0.3
308,521 + -0.5
308,524 + 1.0
308,525 - 2.0
308,534 - 0.3
308,543 - 1.5
308,543 + 0.8
308,554 + 0.3