Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5524

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295158 to 296227 13891 mRNA_5524: 13892 - KOG3002 Zn finger protein, at 297072 to 298317 13892 mRNA_5525: 13893 - HMMPfam-Xyloglucan fucosyltransferase-PF03254, at 299170 to 301469 13893

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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296,121 + 1.6
296,149 - 1.5
296,414 - -0.6
296,607 - 0.0
296,701 - 0.4
296,835 - 0.6
296,850 + -0.1
296,866 - -0.2
296,866 - -0.5
296,875 + 1.6
297,011 - 0.9
297,140 - -0.2
297,286 + 13892 mRNA_5524 0.17 0.7
297,287 + 13892 mRNA_5524 0.17 0.9
297,293 + 13892 mRNA_5524 0.18 0.7
297,406 - 13892 mRNA_5524 0.27 1.6
297,426 - 13892 mRNA_5524 0.28 1.1
297,426 - 13892 mRNA_5524 0.28 1.5
297,482 + 13892 mRNA_5524 0.33 -1.8
297,900 + 13892 mRNA_5524 0.66 -0.6
298,099 - 13892 mRNA_5524 0.82 0.6
298,102 - 13892 mRNA_5524 0.83 0.8
298,175 - 13892 mRNA_5524 0.89 -1.0
298,317 + 0.5
298,500 + -0.9
298,517 + -0.9
298,646 + 0.7
298,934 + -0.1
299,046 - -0.3
299,058 - 0.4
299,061 + -2.2
299,071 + 0.4
299,071 + 0.2
299,071 + 0.2
299,074 + 1.5
299,120 - -1.7
299,128 - 1.1
299,257 - 0.7
299,264 - 2.6
299,278 - 0.4