Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5522

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291900 to 293030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293520 to 294673 13890 mRNA_5523: 13891 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,SUPERFAMILY--SSF57850, at 295158 to 296227 13891

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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292,590 + 13889 mRNA_5521 0.61 -0.4
292,592 - 13889 mRNA_5521 0.61 -0.6
292,629 - 13889 mRNA_5521 0.64 0.6
292,647 + 13889 mRNA_5521 0.66 1.3
292,702 + 13889 mRNA_5521 0.71 -1.1
292,708 - 13889 mRNA_5521 0.71 1.5
292,756 - 13889 mRNA_5521 0.76 0.4
292,767 + 13889 mRNA_5521 0.77 1.4
292,898 + 13889 mRNA_5521 0.88 0.8
292,924 - 1.2
292,935 + 0.3
293,058 + 0.5
293,100 + -1.0
293,190 - -0.1
293,201 + 1.4
293,216 - 1.8
293,222 - -0.1
293,390 + 1.4
293,444 - 0.6
293,507 - 1.6
293,908 + 13890 mRNA_5522 0.34 1.0
293,911 + 13890 mRNA_5522 0.34 -0.1
294,001 - 13890 mRNA_5522 0.42 0.5
294,096 - 13890 mRNA_5522 0.50 -0.8
294,175 + 13890 mRNA_5522 0.57 0.7
294,199 - 13890 mRNA_5522 0.59 -0.1
294,223 - 13890 mRNA_5522 0.61 1.5
294,226 + 13890 mRNA_5522 0.61 -0.2
294,348 + 13890 mRNA_5522 0.72 0.1
294,438 + 13890 mRNA_5522 0.80 1.8
294,482 + 13890 mRNA_5522 0.83 0.0
294,488 - 13890 mRNA_5522 0.84 -0.4
294,499 - 13890 mRNA_5522 0.85 1.1
294,505 + 13890 mRNA_5522 0.85 1.9
294,512 + 13890 mRNA_5522 0.86 -1.1
294,616 + -0.4
294,637 - 0.5
294,654 + 0.8
294,672 - 0.6
294,787 - -0.0
294,797 - -0.4
294,803 - 0.6
294,809 - 0.3
294,813 + -1.1
294,882 + -0.1
294,985 + -0.2
294,985 + -0.3
294,985 + -0.8
294,985 + 1.8
294,995 + 2.0
295,044 - 0.3
295,104 + -0.7
295,220 - -0.2
295,221 - -0.0
295,221 + 0.1
295,529 - 13891 mRNA_5523 0.35 1.7
295,577 + 13891 mRNA_5523 0.39 -0.0
295,582 - 13891 mRNA_5523 0.40 1.9