Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5521

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290297 to 291417 13888 mRNA_5521: 13889 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 291900 to 293030 13889 mRNA_5522: 13890 - ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 293520 to 294673 13890

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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291,103 - 13888 mRNA_5520 0.72 1.5
291,105 + 13888 mRNA_5520 0.72 1.9
291,151 - 13888 mRNA_5520 0.76 0.1
291,153 - 13888 mRNA_5520 0.76 1.2
291,392 - 0.1
291,473 + 2.3
291,540 + -0.5
291,568 + 1.7
291,675 - 0.1
291,856 - 0.6
291,857 + -1.2
291,862 + 3.5
291,891 - 0.2
292,011 - -0.2
292,012 + -0.1
292,015 - 13889 mRNA_5521 0.10 0.2
292,019 + 13889 mRNA_5521 0.11 0.1
292,021 + 13889 mRNA_5521 0.11 0.8
292,021 + 13889 mRNA_5521 0.11 0.6
292,173 - 13889 mRNA_5521 0.24 0.6
292,173 - 13889 mRNA_5521 0.24 -1.4
292,188 - 13889 mRNA_5521 0.25 0.1
292,192 + 13889 mRNA_5521 0.26 -0.5
292,324 - 13889 mRNA_5521 0.37 2.2
292,590 + 13889 mRNA_5521 0.61 -0.4
292,592 - 13889 mRNA_5521 0.61 -0.6
292,629 - 13889 mRNA_5521 0.64 0.6
292,647 + 13889 mRNA_5521 0.66 1.3
292,702 + 13889 mRNA_5521 0.71 -1.1
292,708 - 13889 mRNA_5521 0.71 1.5
292,756 - 13889 mRNA_5521 0.76 0.4
292,767 + 13889 mRNA_5521 0.77 1.4
292,898 + 13889 mRNA_5521 0.88 0.8
292,924 - 1.2
292,935 + 0.3
293,058 + 0.5
293,100 + -1.0
293,190 - -0.1
293,201 + 1.4
293,216 - 1.8
293,222 - -0.1
293,390 + 1.4
293,444 - 0.6
293,507 - 1.6
293,908 + 13890 mRNA_5522 0.34 1.0
293,911 + 13890 mRNA_5522 0.34 -0.1
294,001 - 13890 mRNA_5522 0.42 0.5