Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5519

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5518: 13886 - SUPERFAMILY--SSF49599, at 287492 to 288002 13886 mRNA_5519: 13887 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 288669 to 289832 13887 mRNA_5520: 13888 - KOG0297 TNF receptor-associated factor, at 290297 to 291417 13888

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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288,039 + 3.0
288,175 - -0.2
288,198 - 1.3
288,211 + 0.9
288,263 + -0.6
288,402 - 2.2
288,497 + -0.4
288,636 - 0.5
288,900 - 13887 mRNA_5519 0.20 2.1
288,902 - 13887 mRNA_5519 0.20 -0.4
288,936 - 13887 mRNA_5519 0.23 1.4
289,099 - 13887 mRNA_5519 0.37 3.4
289,108 - 13887 mRNA_5519 0.38 2.7
289,251 + 13887 mRNA_5519 0.50 -1.1
289,539 - 13887 mRNA_5519 0.75 0.2
289,801 - -0.0
289,816 - -0.4
289,953 - 0.8
290,007 - 1.1
290,092 - 1.1
290,102 + 2.4
290,103 - 0.2
290,275 - 0.1
290,661 - 13888 mRNA_5520 0.32 0.5
290,661 - 13888 mRNA_5520 0.32 2.4
290,667 + 13888 mRNA_5520 0.33 0.4
290,673 - 13888 mRNA_5520 0.34 -0.6
290,687 + 13888 mRNA_5520 0.35 -1.0
290,687 - 13888 mRNA_5520 0.35 3.9
290,713 + 13888 mRNA_5520 0.37 0.7
290,744 + 13888 mRNA_5520 0.40 -1.8
290,799 - 13888 mRNA_5520 0.45 1.2