Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5511

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5510: 13878 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 265643 to 266758 13878 mRNA_5511: 13879 - ProSiteProfiles-Zinc finger RING-type profile.-PS50089,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145,SUPERFAMILY--SSF49599,SUPERFAMILY--SSF57850, at 267375 to 268513 13879 mRNA_5512: 13880 - HMMPfam-PB1 domain-PF00564,HMMPfam-CBS domain-PF00571,ProSiteProfiles-CBS domain profile.-PS51371,SMART-Domain in cystathionine beta-synthase and other proteins.-SM00116,SUPERFAMILY--SSF54277,SUPERFAMILY--SSF54631, at 268970 to 271571 13880

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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266,498 + 13878 mRNA_5510 0.77 0.5
266,502 - 13878 mRNA_5510 0.77 -1.3
267,189 + 0.7
267,503 - 13879 mRNA_5511 0.11 0.2
267,521 + 13879 mRNA_5511 0.13 -0.2
267,625 - 13879 mRNA_5511 0.22 0.8
267,636 + 13879 mRNA_5511 0.23 0.5
267,683 - 13879 mRNA_5511 0.27 1.5
267,762 - 13879 mRNA_5511 0.34 -0.0
267,800 - 13879 mRNA_5511 0.37 0.9
267,942 - 13879 mRNA_5511 0.50 -0.2
267,945 - 13879 mRNA_5511 0.50 1.9
267,951 - 13879 mRNA_5511 0.51 2.8
267,954 + 13879 mRNA_5511 0.51 1.4
268,157 + 13879 mRNA_5511 0.69 1.0
268,280 - 13879 mRNA_5511 0.79 0.9
268,429 + 0.7
268,430 - -1.5
268,431 + 0.4
268,454 - -3.5
268,555 - 1.0
268,556 + -0.4
268,678 - 0.7
268,681 - 1.7
268,684 - 3.0
268,862 + 0.9