Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5498

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5498: 13866 - Hypothetical Protein, at 238766 to 240187 13866 mRNA_5499: 13867 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 240567 to 242106 13867

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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237,900 - 1.3
237,925 + 0.5
237,928 + -1.0
238,042 - -0.6
238,073 + -0.7
238,082 - -1.0
238,086 + -1.5
238,097 + 0.0
238,097 + 0.8
238,098 + 0.3
238,191 + 0.8
238,196 - 0.2
238,210 - 1.2
238,212 + -0.1
238,234 + 0.6
238,287 - 0.7
238,319 + 1.6
238,336 + 3.1
238,353 + 3.5
238,359 - 3.3
238,359 + 1.4
238,360 - 0.6
238,396 - -0.0
238,408 - 0.8
238,415 - 0.8
238,416 + 0.6
238,420 + -0.4
238,422 - 1.2
238,446 + 0.2
238,473 + -0.1
238,479 - 0.5
238,484 + 0.3
238,485 - 0.0
238,487 + 2.1
238,507 - 0.2
238,508 + -3.0
238,613 + 0.2
238,619 + -0.1
238,626 + 0.0
238,629 - -0.1
238,633 + -2.1
238,636 + -1.5
238,637 + -1.2
238,639 + 0.3
238,650 - 1.3
238,653 + 0.6
238,656 - -0.0
238,681 + 1.6
238,717 + -0.5
238,732 - -0.5
238,732 + -1.7
238,751 - 0.1
238,758 - 0.4
238,762 - -1.7
238,767 + 0.6
238,770 - 0.7
238,775 - -0.1
238,883 - 0.6
238,893 - -1.1
238,897 - -2.9
238,901 - 1.0
238,904 + 1.9
238,906 + -0.1
238,925 - 13866 mRNA_5498 0.11 1.6
238,934 + 13866 mRNA_5498 0.12 -0.4
238,938 - 13866 mRNA_5498 0.12 0.1
238,968 - 13866 mRNA_5498 0.14 0.3
238,970 - 13866 mRNA_5498 0.14 1.1
238,983 + 13866 mRNA_5498 0.15 -0.0
238,986 + 13866 mRNA_5498 0.15 0.1
238,999 - 13866 mRNA_5498 0.16 0.7
239,004 + 13866 mRNA_5498 0.17 0.9
239,041 - 13866 mRNA_5498 0.19 2.1
239,043 + 13866 mRNA_5498 0.19 -0.9
239,064 + 13866 mRNA_5498 0.21 2.7
239,091 + 13866 mRNA_5498 0.23 -1.3
239,100 + 13866 mRNA_5498 0.23 1.9
239,111 - 13866 mRNA_5498 0.24 -1.7
239,117 - 13866 mRNA_5498 0.25 -0.5
239,146 - 13866 mRNA_5498 0.27 2.0
239,167 + 13866 mRNA_5498 0.28 0.5
239,180 - 13866 mRNA_5498 0.29 -1.3
239,187 + 13866 mRNA_5498 0.30 1.3
239,193 - 13866 mRNA_5498 0.30 1.8
239,193 - 13866 mRNA_5498 0.30 -1.5
239,196 + 13866 mRNA_5498 0.30 -0.1
239,221 - 13866 mRNA_5498 0.32 -0.4
239,232 - 13866 mRNA_5498 0.33 -0.1
239,237 - 13866 mRNA_5498 0.33 0.9
239,243 - 13866 mRNA_5498 0.34 1.7
239,255 - 13866 mRNA_5498 0.34 0.6
239,272 + 13866 mRNA_5498 0.36 1.1
239,275 + 13866 mRNA_5498 0.36 0.2
239,382 + 13866 mRNA_5498 0.43 -1.2
239,481 + 13866 mRNA_5498 0.50 3.0
239,524 - 13866 mRNA_5498 0.53 0.3
239,671 - 13866 mRNA_5498 0.64 0.7
239,783 - 13866 mRNA_5498 0.72 1.2
239,816 + 13866 mRNA_5498 0.74 -0.3
240,374 - 3.3
240,553 + 0.2
240,773 + 13867 mRNA_5499 0.13 0.1
241,007 - 13867 mRNA_5499 0.29 -0.1
241,108 + 13867 mRNA_5499 0.35 -0.5