Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5484

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5483: 13851 - KOG1339 Aspartyl protease, at 202681 to 205111 13851 mRNA_5484: 13852 - K16612 HOOK1 protein HOOK1, at 205499 to 209113 13852 mRNA_5485: 13853 - K02896 RP-L24e, RPL24 large subunit ribosomal protein L24e, at 209798 to 210668 13853

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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204,512 + 13851 mRNA_5483 0.75 0.3
204,990 - -0.2
205,089 - 1.1
205,231 - 0.6
205,249 + 1.7
205,519 + 0.4
205,563 - 1.9
205,572 + 0.0
205,677 - 0.7
205,725 - -1.1
205,779 - -1.2
205,821 - 0.1
205,874 - 13852 mRNA_5484 0.10 -0.8
205,878 + 13852 mRNA_5484 0.10 0.5
205,878 + 13852 mRNA_5484 0.10 -2.3
205,878 + 13852 mRNA_5484 0.10 -1.0
205,952 + 13852 mRNA_5484 0.13 0.9
206,103 - 13852 mRNA_5484 0.17 -1.5
206,292 - 13852 mRNA_5484 0.22 0.4
206,447 + 13852 mRNA_5484 0.26 -0.4
206,695 - 13852 mRNA_5484 0.33 3.5
206,975 + 13852 mRNA_5484 0.41 0.2
206,999 - 13852 mRNA_5484 0.41 -1.3
207,116 - 13852 mRNA_5484 0.45 -0.2
207,147 + 13852 mRNA_5484 0.46 1.9
207,157 - 13852 mRNA_5484 0.46 -0.5
207,577 + 13852 mRNA_5484 0.57 1.4
207,699 - 13852 mRNA_5484 0.61 -0.6
208,066 + 13852 mRNA_5484 0.71 0.1
208,147 - 13852 mRNA_5484 0.73 -1.6
208,157 + 13852 mRNA_5484 0.74 0.3
208,454 + 13852 mRNA_5484 0.82 1.0
208,459 + 13852 mRNA_5484 0.82 -0.3
208,472 - 13852 mRNA_5484 0.82 1.2
208,499 - 13852 mRNA_5484 0.83 0.5
208,861 + 0.2
209,097 + -0.0
209,349 + 0.1
209,360 + 0.7
209,368 - -1.2
210,013 - 13853 mRNA_5485 0.25 0.6