Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5451

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5451: 13819 - Hypothetical Protein, at 122441 to 123785 13819 mRNA_5452: 13820 - HMMPfam-Eukaryotic aspartyl protease-PF00026,PRINTS-Pepsin (A1) aspartic protease family signature-PR00792,ProSitePatterns-Eukaryotic and viral aspartyl proteases active site.-PS00141,SUPERFAMILY--SSF50630, at 124272 to 125754 13820

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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121,539 - 0.4
121,770 - 0.1
121,785 + 1.0
121,938 + -0.5
122,078 - 0.9
122,080 + 2.1
122,093 - 0.5
122,096 - 0.9
122,116 - 1.2
122,671 + 13819 mRNA_5451 0.17 -0.8
122,692 + 13819 mRNA_5451 0.19 0.1
123,123 + 13819 mRNA_5451 0.51 1.1
123,227 + 13819 mRNA_5451 0.58 1.0
123,251 - 13819 mRNA_5451 0.60 -0.2
123,309 - 13819 mRNA_5451 0.65 -1.1
123,346 + 13819 mRNA_5451 0.67 -2.3
123,348 + 13819 mRNA_5451 0.67 -0.3
123,370 - 13819 mRNA_5451 0.69 -0.8
123,379 - 13819 mRNA_5451 0.70 0.8
123,385 - 13819 mRNA_5451 0.70 -0.0
123,400 - 13819 mRNA_5451 0.71 -1.8
123,518 + 13819 mRNA_5451 0.80 -0.6
123,522 + 13819 mRNA_5451 0.80 -0.0
123,525 + 13819 mRNA_5451 0.81 0.4
123,533 + 13819 mRNA_5451 0.81 -0.0
123,534 + 13819 mRNA_5451 0.81 2.1
123,535 + 13819 mRNA_5451 0.81 0.0
123,538 - 13819 mRNA_5451 0.82 1.2
123,545 + 13819 mRNA_5451 0.82 2.9
123,549 - 13819 mRNA_5451 0.82 0.5
123,559 + 13819 mRNA_5451 0.83 0.9
123,566 - 13819 mRNA_5451 0.84 0.1
123,579 - 13819 mRNA_5451 0.85 0.5
123,597 - 13819 mRNA_5451 0.86 -0.6
123,626 - 13819 mRNA_5451 0.88 0.9
123,673 - 0.5
123,674 - 1.3
123,675 + -0.3
123,677 + -0.0
123,678 + 0.2
123,681 - -0.1
123,691 + -0.1
123,703 + 3.3
123,716 - 1.3
123,774 + 0.1
123,813 - 1.6
123,827 - 3.3
123,834 + 0.9
123,836 - 1.1
123,836 - -1.6
123,841 + 1.3
123,857 + -0.4
123,862 + 1.3
123,864 + 0.6
123,869 - 1.6
123,877 + 1.0
123,879 + 0.7
123,884 - 1.1
123,929 + 1.0
123,931 + 0.3
123,943 - 1.4
123,948 + -0.6
123,978 + 2.6
123,978 + 3.3
123,981 - -0.2
123,992 + 0.0
123,995 + 2.4
124,018 - 0.5
124,033 - 0.4
124,052 + 0.7
124,106 - -1.3
124,114 - 0.0
124,115 - 2.6
124,118 + -2.2
124,120 + 0.6
124,122 + 0.2
124,124 - 1.4
124,127 - 2.1
124,129 + 0.5
124,132 - -3.1
124,133 - -1.2
124,133 - -2.2
124,134 - -0.1
124,134 - 0.0
124,136 - -2.2
124,136 - -0.8
124,138 + 0.5
124,142 - 1.4
124,143 - 1.6
124,144 + 0.3
124,144 + -1.0
124,145 + -1.2
124,145 - 3.9
124,146 + 0.1
124,151 - -2.5
124,151 - 0.3
124,152 - 1.5
124,152 + 1.5
124,155 + 2.6
124,162 - 0.1
124,165 - -0.9
124,165 - 0.4
124,183 + 0.2
124,202 + 0.0
124,204 + -0.2
124,244 + -0.4
124,303 + 0.0
124,311 - 2.7
124,347 + 0.3
124,397 - -2.1
124,416 + 1.5
124,441 + 13820 mRNA_5452 0.11 0.1
124,462 + 13820 mRNA_5452 0.13 -0.1
124,489 + 13820 mRNA_5452 0.15 0.2
124,494 - 13820 mRNA_5452 0.15 -0.7
124,629 + 13820 mRNA_5452 0.24 0.6
124,631 + 13820 mRNA_5452 0.24 0.5
124,637 - 13820 mRNA_5452 0.25 0.8