Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5445

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5445: 13813 - K07513 ACAA1 acetyl-CoA acyltransferase 1, at 110701 to 112520 13813 mRNA_5446: 13814 - HMMPfam-Stress responsive A/B Barrel Domain-PF07876,ProSiteProfiles-Stress-response A/B barrel domain profile.-PS51502,SMART-Stress responsive A/B Barrel Domain-SM00886,SUPERFAMILY--SSF54909, at 113170 to 113689 13814

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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109,730 + 0.5
109,756 + 0.5
109,767 + -0.1
109,771 + -0.4
110,048 - -1.4
110,208 + 0.5
110,213 + 0.4
110,385 - 0.0
110,478 - -0.4
110,492 + 1.1
110,527 - 0.2
110,543 + -1.6
110,545 + 1.3
110,561 + 0.1
110,564 + 0.3
110,593 - -0.4
110,598 - -0.7
110,598 - 1.1
110,602 - 1.2
110,616 - 0.1
110,617 - 0.4
110,624 - -0.6
110,624 - -0.1
110,625 + 0.5
110,630 + 0.5
110,632 + 1.9
110,634 - -0.2
110,638 + 0.6
110,779 + 2.0
110,797 - -0.4
110,814 + 1.5
110,937 - 13813 mRNA_5445 0.13 1.4
111,101 - 13813 mRNA_5445 0.22 0.9
111,102 + 13813 mRNA_5445 0.22 1.4
111,104 - 13813 mRNA_5445 0.22 -2.3
111,222 + 13813 mRNA_5445 0.29 0.1
111,243 - 13813 mRNA_5445 0.30 1.4
111,334 - 13813 mRNA_5445 0.35 0.2
111,795 - 13813 mRNA_5445 0.60 0.9
112,102 - 13813 mRNA_5445 0.77 0.8
112,107 - 13813 mRNA_5445 0.77 -0.8
112,283 + 13813 mRNA_5445 0.87 0.8
112,286 - 13813 mRNA_5445 0.87 1.3
112,504 + -0.5
112,518 - -1.1
112,536 - 2.4
112,597 - -0.1
112,668 + -0.4
112,833 - -0.9
112,834 - 0.5
112,845 - -0.3
112,873 + 3.7
112,893 + -0.3
112,981 - -0.0
112,996 - 0.1
113,026 - 1.2