Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5443

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5442: 13810 - HMMPfam-R3H domain-PF01424,HMMPfam-SUZ domain-PF12752,ProSiteProfiles-R3H domain profile.-PS51061,ProSiteProfiles-SUZ domain profile.-PS51673,SUPERFAMILY--SSF82708, at 103873 to 106982 13810 mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107127 to 108436 13811 mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108625 to 109612 13812

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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106,323 - 13810 mRNA_5442 0.79 -0.6
107,212 + -2.8
107,225 + -1.4
107,227 - -0.1
107,229 + -0.2
107,246 - -0.2
107,268 + 13811 mRNA_5443 0.11 -1.7
107,376 + 13811 mRNA_5443 0.19 -0.7
107,526 - 13811 mRNA_5443 0.30 -0.4
107,699 - 13811 mRNA_5443 0.44 0.3
107,721 - 13811 mRNA_5443 0.45 0.7
107,936 - 13811 mRNA_5443 0.62 -0.4
107,953 - 13811 mRNA_5443 0.63 3.0
107,970 - 13811 mRNA_5443 0.64 0.1
108,105 - 13811 mRNA_5443 0.75 -0.9
108,215 - 13811 mRNA_5443 0.83 1.6
108,232 + 13811 mRNA_5443 0.84 -0.4
108,260 - 13811 mRNA_5443 0.86 0.4
108,554 - -1.0
108,572 + 0.6
108,572 - 1.4
108,573 - 1.9
108,709 + -0.8
108,819 - 13812 mRNA_5444 0.20 -0.0
108,860 - 13812 mRNA_5444 0.24 -0.2
109,261 + 13812 mRNA_5444 0.64 0.4
109,294 - 13812 mRNA_5444 0.68 0.3