Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5428

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5427: 13795 - Hypothetical Protein, at 75255 to 76663 13795 mRNA_5428: 13796 - KOG0157 Cytochrome P450 CYP4/CYP19/CYP26 subfamilies, at 77473 to 79440 13796 mRNA_5429: 13797 - K01067 E3.1.2.1, ACH1 acetyl-CoA hydrolase, at 79557 to 82396 13797

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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76,578 - 0.6
76,596 + 1.0
76,811 + 0.4
76,868 + -0.4
77,130 + 2.3
77,150 + 0.3
77,154 + 0.8
77,162 + 1.6
77,299 - -0.3
77,313 + -0.3
77,316 - 1.2
77,321 - -1.6
77,343 + -1.3
77,454 - 1.0
77,483 + -0.0
77,512 + 0.8
77,776 - 13796 mRNA_5428 0.15 1.5
77,784 + 13796 mRNA_5428 0.16 0.4
78,065 - 13796 mRNA_5428 0.30 -1.2
78,066 + 13796 mRNA_5428 0.30 3.6
78,291 - 13796 mRNA_5428 0.42 1.0
78,300 - 13796 mRNA_5428 0.42 0.1
78,491 - 13796 mRNA_5428 0.52 0.4
78,502 - 13796 mRNA_5428 0.52 -1.0
78,563 - 13796 mRNA_5428 0.55 2.4
78,602 + 13796 mRNA_5428 0.57 -1.2
78,907 - 13796 mRNA_5428 0.73 0.7
79,226 + 13796 mRNA_5428 0.89 -0.7
79,295 - 0.8
79,319 - 2.9
79,492 + 0.1
79,780 - -1.3
79,781 + -1.0
79,869 + 13797 mRNA_5429 0.11 1.3
79,869 + 13797 mRNA_5429 0.11 -1.4
79,877 - 13797 mRNA_5429 0.11 1.7
79,889 + 13797 mRNA_5429 0.12 -2.0
79,920 + 13797 mRNA_5429 0.13 0.0
79,975 + 13797 mRNA_5429 0.15 0.2
80,070 + 13797 mRNA_5429 0.18 0.1
80,275 - 13797 mRNA_5429 0.25 0.0