Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5425

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68468 to 70424 13792 mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70571 to 72264 13793 mRNA_5426: 13794 - K06944 K06944 uncharacterized protein, at 72728 to 74932 13794

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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69,709 + 13792 mRNA_5424 0.63 2.0
69,757 + 13792 mRNA_5424 0.66 0.0
69,820 - 13792 mRNA_5424 0.69 0.3
69,873 + 13792 mRNA_5424 0.72 0.5
69,891 + 13792 mRNA_5424 0.73 1.4
70,010 + 13792 mRNA_5424 0.79 0.4
70,045 - 13792 mRNA_5424 0.81 -1.1
70,153 + 13792 mRNA_5424 0.86 0.5
70,186 - 13792 mRNA_5424 0.88 -0.9
70,186 - 13792 mRNA_5424 0.88 -1.5
70,234 + 1.4
70,343 - 0.2
70,343 + 0.2
70,494 - 1.0
70,512 - 0.1
70,535 + 1.5
70,724 - -0.4
70,810 - 13793 mRNA_5425 0.14 -0.3
70,925 - 13793 mRNA_5425 0.21 -0.2
71,048 - 13793 mRNA_5425 0.28 0.9
72,379 - 1.4
72,650 + 0.9
72,855 + 0.6
72,976 - 13794 mRNA_5426 0.11 4.0
73,064 - 13794 mRNA_5426 0.15 1.9
73,104 - 13794 mRNA_5426 0.17 0.6
73,138 + 13794 mRNA_5426 0.19 1.4
73,147 + 13794 mRNA_5426 0.19 1.6
73,149 - 13794 mRNA_5426 0.19 -1.4
73,220 - 13794 mRNA_5426 0.22 -0.2