Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5424

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65728 to 67986 13791 mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68468 to 70424 13792 mRNA_5425: 13793 - K12735 PPIL4 peptidyl-prolyl cis-trans isomerase-like 4, at 70571 to 72264 13793

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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67,542 + 13791 mRNA_5423 0.80 1.8
67,594 + 13791 mRNA_5423 0.83 1.3
67,898 - -0.8
67,981 + 0.7
67,986 - 1.3
68,002 + 0.2
68,037 + 0.0
68,037 + 0.1
68,130 - 0.9
68,130 - 2.8
68,138 - -2.4
68,157 - 1.2
68,158 - 0.3
68,293 + -0.4
68,302 + -0.5
68,327 + -3.1
68,427 - 0.0
68,545 + -2.1
68,574 + -0.4
68,732 + 13792 mRNA_5424 0.13 0.5
68,756 + 13792 mRNA_5424 0.15 0.6
68,756 + 13792 mRNA_5424 0.15 -0.1
68,759 - 13792 mRNA_5424 0.15 -0.9
68,895 - 13792 mRNA_5424 0.22 -1.3
68,898 + 13792 mRNA_5424 0.22 -1.0
68,901 + 13792 mRNA_5424 0.22 -1.5
68,975 - 13792 mRNA_5424 0.26 -0.3
69,139 + 13792 mRNA_5424 0.34 2.0
69,232 - 13792 mRNA_5424 0.39 2.5
69,381 - 13792 mRNA_5424 0.47 0.7
69,500 - 13792 mRNA_5424 0.53 1.1
69,516 + 13792 mRNA_5424 0.54 -0.2
69,516 + 13792 mRNA_5424 0.54 -1.3
69,709 + 13792 mRNA_5424 0.63 2.0
69,757 + 13792 mRNA_5424 0.66 0.0
69,820 - 13792 mRNA_5424 0.69 0.3
69,873 + 13792 mRNA_5424 0.72 0.5
69,891 + 13792 mRNA_5424 0.73 1.4
70,010 + 13792 mRNA_5424 0.79 0.4
70,045 - 13792 mRNA_5424 0.81 -1.1
70,153 + 13792 mRNA_5424 0.86 0.5
70,186 - 13792 mRNA_5424 0.88 -0.9
70,186 - 13792 mRNA_5424 0.88 -1.5
70,234 + 1.4
70,343 - 0.2
70,343 + 0.2
70,494 - 1.0
70,512 - 0.1
70,535 + 1.5
70,724 - -0.4
70,810 - 13793 mRNA_5425 0.14 -0.3
70,925 - 13793 mRNA_5425 0.21 -0.2
71,048 - 13793 mRNA_5425 0.28 0.9