Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5423

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64822 to 65544 13790 mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65728 to 67986 13791 mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68468 to 70424 13792

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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64,730 + 1.5
64,772 + 1.9
64,799 + 1.0
64,822 - 1.1
64,895 - 13790 mRNA_5422 0.10 1.3
64,929 - 13790 mRNA_5422 0.15 0.8
64,930 + 13790 mRNA_5422 0.15 -0.7
64,961 - 13790 mRNA_5422 0.19 2.2
64,961 - 13790 mRNA_5422 0.19 -0.8
65,030 + 13790 mRNA_5422 0.29 0.4
65,070 - 13790 mRNA_5422 0.34 2.0
65,076 + 13790 mRNA_5422 0.35 -2.7
65,089 - 13790 mRNA_5422 0.37 -1.4
65,102 + 13790 mRNA_5422 0.39 0.3
65,200 - 13790 mRNA_5422 0.52 -2.4
65,252 + 13790 mRNA_5422 0.59 0.4
65,373 - 13790 mRNA_5422 0.76 -0.6
65,474 - 1.0
65,494 - 2.1
65,498 - -1.5
65,501 + 0.3
65,657 + 1.8
65,706 - 1.8
65,766 - 0.5
65,774 - -1.9
65,774 - 0.2
65,785 - -0.1
65,808 - -0.5
65,821 - -0.3
65,821 + -1.2
65,825 - 0.0
65,930 + -0.7
65,940 + -0.1
65,976 - 13791 mRNA_5423 0.11 -0.2
66,071 + 13791 mRNA_5423 0.15 -0.0
66,082 + 13791 mRNA_5423 0.16 -0.2
66,102 - 13791 mRNA_5423 0.17 0.2
66,107 + 13791 mRNA_5423 0.17 0.1
66,130 - 13791 mRNA_5423 0.18 -2.1
66,131 + 13791 mRNA_5423 0.18 1.7
66,174 - 13791 mRNA_5423 0.20 1.6
66,183 + 13791 mRNA_5423 0.20 2.7
66,186 - 13791 mRNA_5423 0.20 -3.3
66,256 - 13791 mRNA_5423 0.23 0.2
66,480 + 13791 mRNA_5423 0.33 -0.2
66,480 + 13791 mRNA_5423 0.33 1.1
66,555 - 13791 mRNA_5423 0.37 0.7
66,646 + 13791 mRNA_5423 0.41 1.6
66,661 - 13791 mRNA_5423 0.41 1.4
66,728 - 13791 mRNA_5423 0.44 1.2
66,728 - 13791 mRNA_5423 0.44 -0.1
66,731 + 13791 mRNA_5423 0.44 -0.3
66,740 + 13791 mRNA_5423 0.45 0.2
66,862 - 13791 mRNA_5423 0.50 -0.3
66,862 + 13791 mRNA_5423 0.50 2.1
66,870 + 13791 mRNA_5423 0.51 0.0
66,879 - 13791 mRNA_5423 0.51 0.1
66,949 - 13791 mRNA_5423 0.54 0.8
67,058 - 13791 mRNA_5423 0.59 2.6
67,058 - 13791 mRNA_5423 0.59 -0.1
67,058 - 13791 mRNA_5423 0.59 0.8
67,076 + 13791 mRNA_5423 0.60 -0.3
67,080 + 13791 mRNA_5423 0.60 0.7
67,118 + 13791 mRNA_5423 0.62 3.2
67,225 + 13791 mRNA_5423 0.66 -0.4
67,427 - 13791 mRNA_5423 0.75 1.6
67,459 - 13791 mRNA_5423 0.77 1.2
67,542 + 13791 mRNA_5423 0.80 1.8
67,594 + 13791 mRNA_5423 0.83 1.3
67,898 - -0.8
67,981 + 0.7
67,986 - 1.3
68,002 + 0.2
68,037 + 0.0
68,037 + 0.1
68,130 - 0.9
68,130 - 2.8
68,138 - -2.4
68,157 - 1.2
68,158 - 0.3
68,293 + -0.4
68,302 + -0.5
68,327 + -3.1
68,427 - 0.0
68,545 + -2.1
68,574 + -0.4
68,732 + 13792 mRNA_5424 0.13 0.5
68,756 + 13792 mRNA_5424 0.15 0.6
68,756 + 13792 mRNA_5424 0.15 -0.1
68,759 - 13792 mRNA_5424 0.15 -0.9
68,895 - 13792 mRNA_5424 0.22 -1.3
68,898 + 13792 mRNA_5424 0.22 -1.0
68,901 + 13792 mRNA_5424 0.22 -1.5
68,975 - 13792 mRNA_5424 0.26 -0.3