Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5422

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5421: 13789 - Interpro Domain of unknown function (DUF5102) 0, at 62877 to 64571 13789 mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64822 to 65544 13790 mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65728 to 67986 13791

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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64,122 - 13789 mRNA_5421 0.73 -0.9
64,195 - 13789 mRNA_5421 0.78 0.3
64,476 + -1.4
64,484 + 1.4
64,500 + 0.2
64,503 - 0.8
64,521 + -0.1
64,619 + 2.9
64,621 - 0.2
64,623 - 1.1
64,624 + -0.6
64,655 - 1.2
64,655 - 0.2
64,730 + 1.5
64,772 + 1.9
64,799 + 1.0
64,822 - 1.1
64,895 - 13790 mRNA_5422 0.10 1.3
64,929 - 13790 mRNA_5422 0.15 0.8
64,930 + 13790 mRNA_5422 0.15 -0.7
64,961 - 13790 mRNA_5422 0.19 2.2
64,961 - 13790 mRNA_5422 0.19 -0.8
65,030 + 13790 mRNA_5422 0.29 0.4
65,070 - 13790 mRNA_5422 0.34 2.0
65,076 + 13790 mRNA_5422 0.35 -2.7
65,089 - 13790 mRNA_5422 0.37 -1.4
65,102 + 13790 mRNA_5422 0.39 0.3
65,200 - 13790 mRNA_5422 0.52 -2.4
65,252 + 13790 mRNA_5422 0.59 0.4
65,373 - 13790 mRNA_5422 0.76 -0.6
65,474 - 1.0
65,494 - 2.1
65,498 - -1.5
65,501 + 0.3
65,657 + 1.8
65,706 - 1.8
65,766 - 0.5
65,774 - -1.9
65,774 - 0.2
65,785 - -0.1
65,808 - -0.5
65,821 - -0.3
65,821 + -1.2
65,825 - 0.0
65,930 + -0.7
65,940 + -0.1
65,976 - 13791 mRNA_5423 0.11 -0.2
66,071 + 13791 mRNA_5423 0.15 -0.0
66,082 + 13791 mRNA_5423 0.16 -0.2
66,102 - 13791 mRNA_5423 0.17 0.2
66,107 + 13791 mRNA_5423 0.17 0.1
66,130 - 13791 mRNA_5423 0.18 -2.1
66,131 + 13791 mRNA_5423 0.18 1.7
66,174 - 13791 mRNA_5423 0.20 1.6
66,183 + 13791 mRNA_5423 0.20 2.7
66,186 - 13791 mRNA_5423 0.20 -3.3
66,256 - 13791 mRNA_5423 0.23 0.2
66,480 + 13791 mRNA_5423 0.33 -0.2
66,480 + 13791 mRNA_5423 0.33 1.1