Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5419

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56919 to 58432 13786 mRNA_5419: 13787 - Interpro Cut8, nuclear proteasome tether protein, at 58738 to 60106 13787 mRNA_5420: 13788 - Hypothetical Protein, at 60457 to 62427 13788

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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57,776 + 13786 mRNA_5418 0.57 -1.3
57,778 - 13786 mRNA_5418 0.57 0.1
57,948 - 13786 mRNA_5418 0.68 0.2
58,060 - 13786 mRNA_5418 0.75 1.1
58,079 - 13786 mRNA_5418 0.77 1.2
58,138 - 13786 mRNA_5418 0.81 -0.6
58,166 - 13786 mRNA_5418 0.82 1.2
58,212 - 13786 mRNA_5418 0.85 0.2
58,214 + 13786 mRNA_5418 0.86 0.5
58,395 + 0.6
58,519 - -1.4
58,682 + 0.5
58,816 + 0.2
59,111 + 13787 mRNA_5419 0.27 -0.1
59,124 + 13787 mRNA_5419 0.28 0.9
59,195 - 13787 mRNA_5419 0.33 -1.1
59,258 - 13787 mRNA_5419 0.38 0.7
59,418 + 13787 mRNA_5419 0.50 -0.1
59,424 + 13787 mRNA_5419 0.50 -0.1
59,456 + 13787 mRNA_5419 0.52 0.2
59,511 + 13787 mRNA_5419 0.56 0.7
59,516 - 13787 mRNA_5419 0.57 -0.9
59,547 - 13787 mRNA_5419 0.59 -0.7
59,547 - 13787 mRNA_5419 0.59 1.5
59,554 + 13787 mRNA_5419 0.60 0.9
59,664 - 13787 mRNA_5419 0.68 2.0
59,749 - 13787 mRNA_5419 0.74 1.4
59,831 + 13787 mRNA_5419 0.80 0.3
59,849 - 13787 mRNA_5419 0.81 0.5
59,870 - 13787 mRNA_5419 0.83 0.7
60,011 + 2.6
60,012 + 0.5
60,012 + -1.0
60,019 + -0.9
60,116 - 0.0
60,260 + -0.0
60,289 + 0.6
60,292 - 0.3
60,306 - 0.0
60,320 + 0.0
60,596 + 0.1
60,598 - -0.2
60,688 + 13788 mRNA_5420 0.12 0.1
60,786 - 13788 mRNA_5420 0.17 0.4
60,788 + 13788 mRNA_5420 0.17 -0.7
60,861 - 13788 mRNA_5420 0.20 -0.3
60,882 - 13788 mRNA_5420 0.22 -0.2
60,988 - 13788 mRNA_5420 0.27 -0.6
61,048 - 13788 mRNA_5420 0.30 1.3
61,086 + 13788 mRNA_5420 0.32 -1.5