Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5417

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52502 to 53852 13784 mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53998 to 56725 13785 mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56919 to 58432 13786

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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53,002 + 13784 mRNA_5416 0.37 0.4
53,163 + 13784 mRNA_5416 0.49 0.3
53,273 + 13784 mRNA_5416 0.57 0.7
53,347 - 13784 mRNA_5416 0.63 0.8
53,383 - 13784 mRNA_5416 0.65 0.2
53,512 - 13784 mRNA_5416 0.75 1.2
53,551 + 13784 mRNA_5416 0.78 0.6
53,605 - 13784 mRNA_5416 0.82 -0.1
53,733 - 0.2
54,389 - 13785 mRNA_5417 0.14 1.2
54,442 - 13785 mRNA_5417 0.16 -0.4
54,545 - 13785 mRNA_5417 0.20 -0.3
54,748 + 13785 mRNA_5417 0.27 -0.7
54,750 + 13785 mRNA_5417 0.28 -1.0
54,756 - 13785 mRNA_5417 0.28 0.0
54,792 - 13785 mRNA_5417 0.29 -1.4
54,871 + 13785 mRNA_5417 0.32 0.7
55,060 - 13785 mRNA_5417 0.39 1.2
55,075 - 13785 mRNA_5417 0.39 2.8
55,076 - 13785 mRNA_5417 0.40 2.1
55,202 - 13785 mRNA_5417 0.44 -0.5
55,226 + 13785 mRNA_5417 0.45 -0.5
55,347 + 13785 mRNA_5417 0.49 1.5
55,489 + 13785 mRNA_5417 0.55 0.4
55,495 - 13785 mRNA_5417 0.55 -0.3
55,737 + 13785 mRNA_5417 0.64 1.2
55,739 - 13785 mRNA_5417 0.64 1.1
56,079 + 13785 mRNA_5417 0.76 -0.3
56,363 + 13785 mRNA_5417 0.87 2.2
56,368 + 13785 mRNA_5417 0.87 0.6
56,398 - 13785 mRNA_5417 0.88 0.9
56,647 + 1.5
56,668 - 1.8
56,684 - 1.9
56,782 - 0.6
56,804 - 1.8
56,813 - 0.1
56,828 - -0.2
56,837 - 0.5
56,852 - 0.3
56,856 + 1.3
56,971 + 0.4
57,071 - 13786 mRNA_5418 0.10 -0.9
57,095 - 13786 mRNA_5418 0.12 0.2
57,114 + 13786 mRNA_5418 0.13 -0.3
57,271 + 13786 mRNA_5418 0.23 0.2
57,380 - 13786 mRNA_5418 0.30 -0.0
57,513 + 13786 mRNA_5418 0.39 1.5
57,518 - 13786 mRNA_5418 0.40 -1.3
57,518 - 13786 mRNA_5418 0.40 0.8
57,531 + 13786 mRNA_5418 0.40 0.6
57,531 + 13786 mRNA_5418 0.40 -0.3
57,670 - 13786 mRNA_5418 0.50 0.1
57,684 - 13786 mRNA_5418 0.51 -2.4
57,702 + 13786 mRNA_5418 0.52 0.4