Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5402

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5401: 13769 - HMMPfam-Complex 1 protein (LYR family)-PF05347, at 15776 to 16734 13769 mRNA_5402: 13770 - KOG2938 Predicted inosine-uridine preferring nucleoside hydrolase, at 17110 to 18696 13770 mRNA_5403: 13771 - K00789 metK S-adenosylmethionine synthetase, at 18980 to 21610 13771

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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16,273 + 13769 mRNA_5401 0.52 0.3
16,357 + 13769 mRNA_5401 0.61 0.9
16,669 + 1.9
16,804 + -1.1
16,807 + 0.4
16,813 + -0.0
16,826 - -1.2
16,842 - 0.8
16,989 + -1.1
16,992 + 0.1
17,002 + 0.3
17,119 - -1.0
17,262 + 2.4
17,281 + 13770 mRNA_5402 0.11 -0.3
17,325 + 13770 mRNA_5402 0.14 1.3
17,516 + 13770 mRNA_5402 0.26 1.0
17,557 + 13770 mRNA_5402 0.28 1.5
17,728 - 13770 mRNA_5402 0.39 3.1
17,728 - 13770 mRNA_5402 0.39 1.0
17,752 + 13770 mRNA_5402 0.40 1.2
17,946 + 13770 mRNA_5402 0.53 1.2
18,318 + 13770 mRNA_5402 0.76 0.9
18,416 + 13770 mRNA_5402 0.82 -0.5
18,602 + -0.4
18,874 - -2.0
19,029 - -0.5
19,030 - 1.0
19,032 + 0.6
19,042 - 0.9
19,044 - 0.3
19,045 - 1.2
19,046 - 2.3
19,046 - -1.0
19,047 + -0.3
19,048 - 0.0
19,057 + 0.2
19,057 + 0.3
19,058 - 0.8
19,059 - 0.0
19,060 - 1.3
19,062 + 2.8
19,066 + 0.2
19,067 + 1.6
19,068 + -0.4
19,069 - -1.3
19,072 - 0.9
19,075 + -0.2
19,079 + -0.3
19,081 + 0.7
19,084 - 0.8
19,208 - -0.4
19,209 - 0.0
19,217 + 1.0
19,230 + -0.2