Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5399

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5398: 13766 - K17871 ndh1 NADH-ubiquinone reductase (non-electrogenic), at 8077 to 11128 13766 mRNA_5399: 13767 - K07078 K07078 uncharacterized protein, at 11684 to 12574 13767 mRNA_5400: 13768 - K07786 emrY MFS transporter, DHA2 family, multidrug resistance protein, at 13151 to 15531 13768

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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10,713 - 13766 mRNA_5398 0.86 -0.9
10,749 + 13766 mRNA_5398 0.88 -0.4
10,821 + 13766 mRNA_5398 0.90 -1.7
10,853 + 2.9
10,874 + -0.7
10,879 + 0.1
10,972 - -0.8
10,973 + 1.0
11,196 + 0.3
11,200 - -0.0
11,291 - 1.0
11,429 + 1.4
11,435 - -0.5
11,447 + 1.3
11,451 + 0.4
11,466 - 2.1
11,467 + 0.8
11,467 + 3.1
11,472 + 0.3
11,488 + 1.3
11,496 + 2.9
11,641 + 0.7
11,663 + 1.6
11,679 + 0.1
11,681 - -2.5
11,681 + -0.9
11,793 - 13767 mRNA_5399 0.12 -2.4
11,863 - 13767 mRNA_5399 0.20 1.1
11,937 - 13767 mRNA_5399 0.28 0.1
11,938 - 13767 mRNA_5399 0.29 -0.9
12,242 + 13767 mRNA_5399 0.63 -0.2
12,364 + 13767 mRNA_5399 0.76 -0.8
12,367 - 13767 mRNA_5399 0.77 3.5
12,483 - 13767 mRNA_5399 0.90 0.1
12,518 + 0.1
12,615 + -1.6
12,815 + 0.4
12,828 + 0.1
13,061 - -0.3
13,121 + -1.2
13,248 + 0.1
13,534 - 13768 mRNA_5400 0.16 0.3
13,562 + 13768 mRNA_5400 0.17 0.7