Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5389

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5388: 13756 - K02931 RP-L5, MRPL5, rplE large subunit ribosomal protein L5, at 628120 to 629112 13756 mRNA_5389: 13757 - KOG0750 Mitochondrial solute carrier protein, at 629263 to 631005 13757 mRNA_5390: 13758 - K03065 PSMC3, RPT5 26S proteasome regulatory subunit T5, at 631553 to 634043 13758

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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629,132 - 0.1
629,133 - -0.7
629,140 - 0.2
629,167 + 0.8
629,168 + 1.4
629,181 + -2.0
629,181 + -0.3
629,270 - 1.1
629,291 - -0.3
629,294 - -0.3
629,294 - 2.6
629,305 + -0.3
629,308 - -2.2
629,311 + 0.1
629,319 - 1.1
629,320 + -0.1
629,322 + 2.4
629,322 - 0.4
629,336 + -0.4
629,341 - 0.8
629,362 + 1.1
629,367 - 0.2
629,460 - 13757 mRNA_5389 0.11 0.7
629,515 + 13757 mRNA_5389 0.14 0.8
629,607 - 13757 mRNA_5389 0.20 2.4
629,621 - 13757 mRNA_5389 0.21 0.6
629,628 - 13757 mRNA_5389 0.21 2.0
629,758 - 13757 mRNA_5389 0.28 1.0
629,762 + 13757 mRNA_5389 0.29 0.3
629,900 - 13757 mRNA_5389 0.37 0.5
629,918 + 13757 mRNA_5389 0.38 -0.9
630,046 - 13757 mRNA_5389 0.45 1.2
630,187 - 13757 mRNA_5389 0.53 3.0
630,368 + 13757 mRNA_5389 0.63 -2.4
630,450 - 13757 mRNA_5389 0.68 0.3
630,690 + 13757 mRNA_5389 0.82 0.5
631,357 + 2.8
631,465 + 1.9
631,476 - -1.9