Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5363

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5362: 13730 - Hypothetical Protein, at 543125 to 544034 13730 mRNA_5363: 13731 - KOG0254 Predicted transporter (major facilitator superfamily), at 544330 to 546394 13731 mRNA_5364: 13732 - KOG1630 Growth hormone-induced protein and related proteins, at 546685 to 547952 13732

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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543,418 - 13730 mRNA_5362 0.32 -0.9
543,625 - 13730 mRNA_5362 0.55 0.7
543,783 - 13730 mRNA_5362 0.72 1.8
543,816 + 13730 mRNA_5362 0.76 -0.5
543,931 + 13730 mRNA_5362 0.89 -0.2
543,931 + 13730 mRNA_5362 0.89 -0.1
543,951 - -2.3
543,959 - 0.8
543,959 + 0.2
543,970 - 0.2
544,005 - -0.1
544,007 - 1.5
544,029 - -0.4
544,035 + 0.9
544,084 - -0.6
544,109 + 0.1
544,418 - -0.1
544,761 + 13731 mRNA_5363 0.21 -1.1
546,375 + 2.5
546,402 + 1.9
546,652 - 1.2
546,710 + 2.3
546,860 + 13732 mRNA_5364 0.14 -1.2
546,914 + 13732 mRNA_5364 0.18 -0.4
547,123 + 13732 mRNA_5364 0.35 2.2
547,238 - 13732 mRNA_5364 0.44 -0.4
547,267 + 13732 mRNA_5364 0.46 0.5
547,267 + 13732 mRNA_5364 0.46 -0.3
547,270 - 13732 mRNA_5364 0.46 0.2