Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5350

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5349: 13717 - K17427 MRPL46 large subunit ribosomal protein L46, at 514418 to 515269 13717 mRNA_5350: 13718 - K20310 TRAPPC13 trafficking protein particle complex subunit 13, at 515714 to 517641 13718 mRNA_5351: 13719 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 518393 to 520382 13719

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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515,515 - 0.5
515,515 + 0.3
515,519 - -1.1
515,525 + -1.9
515,528 - -0.4
515,537 - 0.9
515,682 + 0.5
515,823 + 0.6
515,971 + 13718 mRNA_5350 0.13 1.1
516,089 - 13718 mRNA_5350 0.19 0.8
516,379 + 13718 mRNA_5350 0.34 0.2
516,383 - 13718 mRNA_5350 0.35 2.2
516,384 + 13718 mRNA_5350 0.35 -3.4
516,403 + 13718 mRNA_5350 0.36 -0.3
516,659 + 13718 mRNA_5350 0.49 2.4
516,693 + 13718 mRNA_5350 0.51 2.4
517,255 + 13718 mRNA_5350 0.80 2.1
517,256 - 13718 mRNA_5350 0.80 -2.0
517,404 + 13718 mRNA_5350 0.88 1.5
517,539 - -1.7
517,874 + 0.0
518,005 + -0.2
518,015 + 2.1
518,023 - 2.1
518,056 + 0.6
518,075 + -0.8
518,083 - 1.4
518,098 + 0.4
518,112 - 0.6
518,114 + 1.7
518,118 + 0.5
518,119 - -0.1
518,123 - 2.0
518,142 + 0.0
518,157 - -0.2
518,158 + -0.6
518,159 + 2.7
518,169 + -0.4
518,181 - 2.2
518,186 - 1.2
518,191 + -0.2
518,195 - 1.5
518,198 - 0.0
518,203 - 2.5
518,203 - 0.1
518,207 - -0.0
518,209 - -0.2
518,211 + -0.5
518,212 - 2.7
518,228 + 1.6
518,230 - 2.6
518,239 - 0.3
518,244 - -0.3
518,247 + -0.5
518,249 - 0.6
518,289 + -0.2
518,291 + -0.1
518,292 - 0.2
518,301 - 0.7
518,302 - 0.2
518,305 - 0.4
518,324 + 0.1
518,325 + 0.8
518,329 + -1.0
518,419 - -0.9
518,425 + -0.1
518,455 - 0.6
518,583 + -0.3