Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5343

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5342: 13710 - KOG0692 Pentafunctional AROM protein, at 496893 to 498783 13710 mRNA_5343: 13711 - K01835 pgm phosphoglucomutase, at 499617 to 502031 13711 mRNA_5344: 13712 - KOG4176 Uncharacterized conserved protein, at 502069 to 503147 13712

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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498,683 + 0.2
498,700 - -2.3
498,926 + 2.2
498,935 - -1.2
498,953 - 0.7
498,980 + 1.0
499,540 + -0.6
499,548 - 0.6
499,556 - 0.7
499,575 - -0.4
499,710 + -0.3
499,721 + 1.8
499,723 + 2.3
499,851 - 0.9
499,858 + -0.6
500,122 + 13711 mRNA_5343 0.21 0.5
500,134 + 13711 mRNA_5343 0.21 0.9
500,557 + 13711 mRNA_5343 0.39 0.6
500,560 - 13711 mRNA_5343 0.39 0.4
500,560 - 13711 mRNA_5343 0.39 -1.2
500,575 + 13711 mRNA_5343 0.40 0.0
500,599 - 13711 mRNA_5343 0.41 -0.2
500,763 - 13711 mRNA_5343 0.47 1.5
500,868 + 13711 mRNA_5343 0.52 -1.5
500,884 + 13711 mRNA_5343 0.52 0.7
501,011 - 13711 mRNA_5343 0.58 1.3
501,113 - 13711 mRNA_5343 0.62 -0.2
501,574 + 13711 mRNA_5343 0.81 0.5
501,655 - 13711 mRNA_5343 0.84 0.3
501,716 + 13711 mRNA_5343 0.87 -0.4
501,754 - 13711 mRNA_5343 0.88 0.7
501,759 + 13711 mRNA_5343 0.89 -1.6
502,022 + 0.4
502,072 + -0.3
502,203 + 13712 mRNA_5344 0.12 -1.8
502,301 - 13712 mRNA_5344 0.22 0.8
502,302 + 13712 mRNA_5344 0.22 1.1
502,313 + 13712 mRNA_5344 0.23 1.6
502,448 + 13712 mRNA_5344 0.35 -0.2
502,773 - 13712 mRNA_5344 0.65 -0.0
502,888 - 13712 mRNA_5344 0.76 -0.7
503,028 - 13712 mRNA_5344 0.89 2.1