Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5319

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5318: 13686 - KOG4315 G-patch nucleic acid binding protein, at 444861 to 446150 13686 mRNA_5319: 13687 - HMMPfam-Plasma-membrane choline transporter-PF04515, at 446863 to 449105 13687 mRNA_5320: 13688 - K03038 PSMD7, RPN8 26S proteasome regulatory subunit N8, at 449451 to 450740 13688

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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446,205 - 0.0
446,212 + -0.9
446,322 + -0.4
446,542 - -0.6
446,667 - -0.7
446,709 + -0.6
446,825 - -0.6
446,981 - 0.8
447,130 - 13687 mRNA_5319 0.12 1.3
447,396 - 13687 mRNA_5319 0.24 1.2
447,986 - 13687 mRNA_5319 0.50 -0.0
447,993 + 13687 mRNA_5319 0.50 0.1
448,144 + 13687 mRNA_5319 0.57 0.4
448,359 + 13687 mRNA_5319 0.67 -0.6
448,550 + 13687 mRNA_5319 0.75 -0.1
448,630 + 13687 mRNA_5319 0.79 1.2
448,736 + 13687 mRNA_5319 0.84 0.9
448,855 + 13687 mRNA_5319 0.89 -0.6
448,882 + 0.8
448,891 - 0.5
448,912 + 0.2
449,162 - 0.0
449,172 - -1.5
449,176 - -0.8
449,177 + -0.5
449,177 - -1.5
449,198 + -0.4