Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5310

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5309: 13677 - KOG0628 Aromatic-L-amino-acid/L-histidine decarboxylase, at 423149 to 425154 13677 mRNA_5310: 13678 - Hypothetical Protein, at 425565 to 427309 13678 mRNA_5311: 13679 - Hypothetical Protein, at 427613 to 428578 13679

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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424,583 + 13677 mRNA_5309 0.71 1.3
424,906 - 13677 mRNA_5309 0.88 -0.8
425,007 + 0.4
425,019 + -0.1
425,024 - 2.1
425,028 + 0.3
425,144 - 0.6
425,147 - -0.3
425,300 - 0.6
425,308 - 1.4
425,312 - -0.2
425,312 - -1.2
425,314 - -1.6
425,323 - 2.1
425,324 + 2.2
425,328 + 1.5
425,328 + 0.2
425,328 + 0.1
425,338 - 1.1
425,341 + 0.2
425,341 - -0.6
425,352 - 1.0
425,468 + 0.3
425,475 + -0.2
425,477 + 0.5
425,484 + -0.9
425,486 + 0.4
425,498 + 0.5
425,498 + 1.1
425,502 + -1.3
425,620 + 2.1
425,640 + 0.7
425,642 + 0.8
425,648 - -1.1
425,902 + 13678 mRNA_5310 0.19 0.0
425,939 + 13678 mRNA_5310 0.21 0.6
426,061 + 13678 mRNA_5310 0.28 2.0
426,640 + 13678 mRNA_5310 0.62 -1.4
426,642 - 13678 mRNA_5310 0.62 2.0
426,709 + 13678 mRNA_5310 0.66 0.6
427,160 + 0.2
427,240 - 3.0
427,241 + 1.1
427,261 + -0.2
427,314 - -0.1
427,323 - 1.0
427,361 - -0.1
427,364 - -0.7
427,388 - 0.6
427,472 + -1.2
427,487 - 0.6
427,513 + -1.9
427,529 - -1.7
427,548 + 0.9
427,587 - 2.1
427,604 + -0.8
427,620 - -0.1
427,628 - -0.3
427,665 - 1.4
427,667 + -0.2
427,671 + 2.1
427,710 + 13679 mRNA_5311 0.10 2.7
427,744 + 13679 mRNA_5311 0.14 -0.5
427,843 + 13679 mRNA_5311 0.24 1.0
428,068 - 13679 mRNA_5311 0.47 0.2
428,075 + 13679 mRNA_5311 0.48 -1.1
428,106 - 13679 mRNA_5311 0.51 -0.2
428,203 + 13679 mRNA_5311 0.61 -0.4
428,218 - 13679 mRNA_5311 0.63 0.3
428,251 - 13679 mRNA_5311 0.66 1.1