Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5308

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5307: 13675 - KOG3769 Ribonuclease III domain proteins, at 419822 to 421852 13675 mRNA_5308: 13676 - Hypothetical Protein, at 421969 to 422926 13676 mRNA_5309: 13677 - KOG0628 Aromatic-L-amino-acid/L-histidine decarboxylase, at 423149 to 425154 13677

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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421,911 - 0.9
421,918 + -1.3
421,923 - -0.2
421,933 + -1.0
421,934 + 0.5
421,940 - -0.6
421,943 + 1.9
422,063 + 0.9
422,066 + 13676 mRNA_5308 0.10 0.8
422,071 - 13676 mRNA_5308 0.11 1.7
422,071 - 13676 mRNA_5308 0.11 -1.1
422,077 - 13676 mRNA_5308 0.11 -0.0
422,079 - 13676 mRNA_5308 0.11 -0.7
422,105 - 13676 mRNA_5308 0.14 0.6
422,240 + 13676 mRNA_5308 0.28 0.4
422,242 + 13676 mRNA_5308 0.28 0.2
422,275 + 13676 mRNA_5308 0.32 1.5
422,520 + 13676 mRNA_5308 0.58 1.7
422,761 - 13676 mRNA_5308 0.83 -0.5
423,117 + -0.3
423,285 + -0.6
423,411 - 13677 mRNA_5309 0.13 -1.5
423,648 + 13677 mRNA_5309 0.25 -0.5
423,669 + 13677 mRNA_5309 0.26 0.1
423,878 - 13677 mRNA_5309 0.36 0.0