Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5305

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5304: 13672 - KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230, at 409088 to 413869 13672 mRNA_5305: 13673 - K14859 SSF1_2 ribosome biogenesis protein SSF1/2, at 414349 to 416763 13673 mRNA_5306: 13674 - BLAST PQ-loop repeat protein [Colletotrichum tofieldiae], at 417031 to 419663 13674

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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413,378 - 13672 mRNA_5304 0.90 0.9
413,495 + 1.0
413,645 - 2.0
413,918 + 0.4
413,942 - -0.5
414,232 + 0.5
414,245 - -1.4
415,920 - 13673 mRNA_5305 0.65 0.4
416,203 - 13673 mRNA_5305 0.77 2.8
416,485 + 13673 mRNA_5305 0.88 -0.2
416,485 + 13673 mRNA_5305 0.88 0.8
416,610 + -0.2
416,649 + -0.3
416,971 + -1.3
416,977 + 1.6
417,024 + -0.6
417,028 - -1.0
417,065 - -1.7
417,091 - -1.9
417,365 - 13674 mRNA_5306 0.13 -2.0
417,686 - 13674 mRNA_5306 0.25 -0.2