Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5304

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5303: 13671 - K17608 STRN1_3_4 striatin 1/3/4, at 405190 to 408801 13671 mRNA_5304: 13672 - KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230, at 409088 to 413869 13672 mRNA_5305: 13673 - K14859 SSF1_2 ribosome biogenesis protein SSF1/2, at 414349 to 416763 13673

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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408,182 - 13671 mRNA_5303 0.83 2.8
408,485 + 0.1
408,522 + -0.5
408,525 + 1.5
408,596 + 0.0
408,806 + -0.4
408,881 - 0.9
409,158 - 0.1
409,176 + 2.1
409,330 - 0.7
409,336 + -0.3
409,363 - 1.4
409,682 + 13672 mRNA_5304 0.12 1.4
409,865 - 13672 mRNA_5304 0.16 0.9
409,905 - 13672 mRNA_5304 0.17 -1.5
409,919 + 13672 mRNA_5304 0.17 0.3
410,072 + 13672 mRNA_5304 0.21 -0.3
410,108 - 13672 mRNA_5304 0.21 -0.3
410,263 + 13672 mRNA_5304 0.25 0.3
410,452 - 13672 mRNA_5304 0.29 1.5
410,544 + 13672 mRNA_5304 0.30 2.5
410,587 - 13672 mRNA_5304 0.31 1.9
411,333 + 13672 mRNA_5304 0.47 0.3
411,356 - 13672 mRNA_5304 0.47 -0.7
411,614 - 13672 mRNA_5304 0.53 -0.1
411,748 + 13672 mRNA_5304 0.56 0.4
412,087 + 13672 mRNA_5304 0.63 0.2
412,479 - 13672 mRNA_5304 0.71 -1.4
412,885 + 13672 mRNA_5304 0.79 2.4
413,378 - 13672 mRNA_5304 0.90 0.9
413,495 + 1.0
413,645 - 2.0
413,918 + 0.4
413,942 - -0.5
414,232 + 0.5
414,245 - -1.4