Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5303

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5303: 13671 - K17608 STRN1_3_4 striatin 1/3/4, at 405190 to 408801 13671 mRNA_5304: 13672 - KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230, at 409088 to 413869 13672

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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404,267 + -0.9
404,280 - 0.6
404,286 + 0.9
404,397 - 0.1
404,401 - -1.0
404,403 - 0.4
404,420 - -0.6
404,420 + 0.7
404,505 - -0.3
404,505 - -0.2
404,525 - -1.2
404,538 + -0.6
404,539 - -0.5
404,654 - -1.1
404,654 - 0.4
404,655 - -1.1
404,666 + 0.2
404,675 + -0.1
404,814 - -1.1
404,842 - 0.4
404,868 - -0.7
404,946 - 2.2
404,986 + 0.2
405,003 + 1.0
405,114 + 0.2
406,006 + 13671 mRNA_5303 0.23 2.5
406,233 - 13671 mRNA_5303 0.29 -1.0
406,424 - 13671 mRNA_5303 0.34 1.0
406,574 - 13671 mRNA_5303 0.38 0.5
406,888 - 13671 mRNA_5303 0.47 -1.3
406,912 - 13671 mRNA_5303 0.48 2.2
406,936 + 13671 mRNA_5303 0.48 2.2
406,986 - 13671 mRNA_5303 0.50 -0.4
406,995 - 13671 mRNA_5303 0.50 0.4
407,008 - 13671 mRNA_5303 0.50 -0.9
407,018 - 13671 mRNA_5303 0.51 0.8
407,584 - 13671 mRNA_5303 0.66 -2.7
407,989 + 13671 mRNA_5303 0.77 1.5
408,060 - 13671 mRNA_5303 0.79 0.2
408,182 - 13671 mRNA_5303 0.83 2.8
408,485 + 0.1
408,522 + -0.5
408,525 + 1.5
408,596 + 0.0
408,806 + -0.4
408,881 - 0.9
409,158 - 0.1
409,176 + 2.1
409,330 - 0.7
409,336 + -0.3
409,363 - 1.4
409,682 + 13672 mRNA_5304 0.12 1.4