Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5302

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5301: 13669 - K13950 pabAB para-aminobenzoate synthetase, at 394643 to 397418 13669 mRNA_5302: 13670 - K08711 ABCG2.PDR, CDR1 ATP-binding cassette, subfamily G (WHITE), member 2, PDR, at 397977 to 403896 13670

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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397,060 - 13669 mRNA_5301 0.87 0.3
397,161 + 2.7
397,207 - 0.8
397,376 - 0.7
397,498 + 0.8
397,526 + 1.3
397,809 - 0.9
397,818 + 0.5
398,115 + -0.1
398,287 + -1.2
398,287 + 0.2
398,389 - 0.2
398,390 + -0.8
398,466 + -0.9
398,620 - 13670 mRNA_5302 0.11 -0.7
398,972 - 13670 mRNA_5302 0.17 -1.4
399,129 + 13670 mRNA_5302 0.19 0.9
399,245 + 13670 mRNA_5302 0.21 0.5
399,285 + 13670 mRNA_5302 0.22 0.5
399,358 - 13670 mRNA_5302 0.23 -0.3
399,535 + 13670 mRNA_5302 0.26 2.5
399,717 + 13670 mRNA_5302 0.29 -0.1
399,726 - 13670 mRNA_5302 0.30 0.4
399,813 + 13670 mRNA_5302 0.31 0.6
399,814 + 13670 mRNA_5302 0.31 0.6
399,976 + 13670 mRNA_5302 0.34 -0.2
400,145 + 13670 mRNA_5302 0.37 0.9
400,286 - 13670 mRNA_5302 0.39 -1.9
400,580 + 13670 mRNA_5302 0.44 0.4
400,613 - 13670 mRNA_5302 0.45 2.1
400,618 - 13670 mRNA_5302 0.45 0.9
400,682 - 13670 mRNA_5302 0.46 0.0
401,055 - 13670 mRNA_5302 0.52 -1.4
401,134 + 13670 mRNA_5302 0.53 -0.2
401,272 + 13670 mRNA_5302 0.56 -2.1
401,279 + 13670 mRNA_5302 0.56 -2.9
401,331 - 13670 mRNA_5302 0.57 -0.5
401,367 + 13670 mRNA_5302 0.57 1.5
401,750 - 13670 mRNA_5302 0.64 -0.4
401,846 + 13670 mRNA_5302 0.65 1.0
402,159 + 13670 mRNA_5302 0.71 1.5
403,219 - 13670 mRNA_5302 0.89 2.4
403,637 - 0.6
403,817 + -1.5
403,936 - -0.0
403,947 + 0.3
404,063 - 0.1
404,075 - -0.2
404,085 + 1.1
404,090 + -0.2
404,091 + 0.7
404,100 - -1.1
404,112 + 0.3
404,159 + -2.0
404,160 + 0.4
404,169 - 0.5
404,171 + 0.2
404,183 - 1.0
404,183 + 1.4
404,267 + -0.9
404,280 - 0.6
404,286 + 0.9
404,397 - 0.1
404,401 - -1.0
404,403 - 0.4
404,420 - -0.6
404,420 + 0.7
404,505 - -0.3
404,505 - -0.2
404,525 - -1.2
404,538 + -0.6
404,539 - -0.5
404,654 - -1.1
404,654 - 0.4
404,655 - -1.1
404,666 + 0.2
404,675 + -0.1
404,814 - -1.1
404,842 - 0.4
404,868 - -0.7