Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5295

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5294: 13662 - K02830 HRAD1, RAD17 cell cycle checkpoint protein, at 378624 to 380568 13662 mRNA_5295: 13663 - Hypothetical Protein, at 381073 to 381951 13663 mRNA_5296: 13664 - Hypothetical Protein, at 382436 to 382844 13664

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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380,611 - 0.8
380,644 - -0.2
380,665 + 0.5
380,668 + -1.9
380,782 - -0.2
380,929 - 1.3
380,939 - -0.3
380,949 + -1.0
380,996 - -1.1
381,182 - 13663 mRNA_5295 0.12 2.9
381,627 + 13663 mRNA_5295 0.63 0.9
381,637 + 13663 mRNA_5295 0.64 -1.9
381,659 + 13663 mRNA_5295 0.67 -0.6
381,661 - 13663 mRNA_5295 0.67 1.1
381,781 + 13663 mRNA_5295 0.81 -0.2
381,782 - 13663 mRNA_5295 0.81 -0.2
381,796 - 13663 mRNA_5295 0.82 -0.5
381,809 + 13663 mRNA_5295 0.84 -0.8
381,812 - 13663 mRNA_5295 0.84 2.0
381,813 - 13663 mRNA_5295 0.84 0.1
381,820 - 13663 mRNA_5295 0.85 -1.3
381,880 - -0.3
381,933 - -0.1
381,944 - -0.7
381,955 - 0.5
381,956 + 0.1
381,967 - -1.0
382,042 - 0.7
382,093 + 0.7
382,097 + 0.7
382,103 + 2.7
382,106 + 0.8
382,114 + -1.1
382,205 - -0.1
382,232 + -0.5
382,255 - -0.3
382,276 - 0.8
382,281 + 0.7
382,353 - -0.3
382,354 + -1.2
382,379 + 2.3
382,386 + -0.7
382,561 + 13664 mRNA_5296 0.31 0.9
382,614 + 13664 mRNA_5296 0.44 0.2
382,638 - 13664 mRNA_5296 0.49 0.9
382,656 + 13664 mRNA_5296 0.54 2.7
382,747 + 13664 mRNA_5296 0.76 0.5
382,809 - 0.2
382,812 - -0.0
382,813 + 0.6
382,814 - 0.8
382,823 - -2.8
382,823 - 1.1
382,824 - 0.3
382,848 - -0.5
382,864 - -0.2
382,869 + -0.5
382,874 - 0.0
382,879 + -0.3
382,882 - 1.3
382,883 + 0.5
382,885 - 2.1
382,907 - -0.2
382,911 + 0.9
382,912 - -0.7
382,921 + 1.2