Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5290

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363937 to 365504 13657 mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365926 to 369880 13658 mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370278 to 371436 13659

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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364,965 - 13657 mRNA_5289 0.66 -0.1
365,130 + 13657 mRNA_5289 0.76 0.8
365,141 - 13657 mRNA_5289 0.77 0.0
365,286 - 13657 mRNA_5289 0.86 -0.3
365,368 - 0.6
365,385 + 0.6
365,404 - -0.1
365,474 - 0.6
365,710 - 0.6
365,714 + -0.3
365,733 + 0.8
365,865 + 0.2
365,890 - 0.4
365,936 - -0.4
365,976 + 0.7
366,004 + -1.1
366,146 - -1.3
366,151 + -0.9
366,159 - -0.3
366,168 + 0.7
366,172 + 2.9
366,351 + 13658 mRNA_5290 0.11 0.1
366,989 + 13658 mRNA_5290 0.27 -0.1
367,083 + 13658 mRNA_5290 0.29 1.7
367,154 - 13658 mRNA_5290 0.31 -0.1
367,251 + 13658 mRNA_5290 0.34 0.1
367,326 + 13658 mRNA_5290 0.35 2.8
367,681 - 13658 mRNA_5290 0.44 0.2
367,719 + 13658 mRNA_5290 0.45 1.9
367,728 + 13658 mRNA_5290 0.46 0.1
367,818 + 13658 mRNA_5290 0.48 -0.5
368,441 + 13658 mRNA_5290 0.64 -0.3
368,600 + 13658 mRNA_5290 0.68 -0.1
368,997 + 13658 mRNA_5290 0.78 3.2
369,132 - 13658 mRNA_5290 0.81 0.8
369,165 + 13658 mRNA_5290 0.82 -1.2
369,547 - -0.2
369,581 - 3.1
369,591 + -1.2
369,694 - -0.4
369,730 + 0.9
369,743 - 1.5
369,743 + 2.0
369,873 + -0.1
369,885 - -0.1
369,900 + -1.5
369,902 - 1.8
370,012 - 0.9
370,020 - -0.3
370,020 - 0.1
370,021 - 0.6
370,033 + 3.1
370,036 + 0.5
370,039 - -0.9
370,039 - -0.1
370,043 + 0.8
370,070 - 0.5
370,091 - 0.3
370,095 + 0.1
370,097 + -0.2
370,202 + -0.3
370,489 - 13659 mRNA_5291 0.18 0.3
370,521 + 13659 mRNA_5291 0.21 -0.5
370,738 - 13659 mRNA_5291 0.40 0.3
370,786 - 13659 mRNA_5291 0.44 0.2