Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5280

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647 mRNA_5280: 13648 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 348551 to 349893 13648 mRNA_5281: 13649 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 350665 to 352490 13649

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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347,729 - 0.5
347,796 + 0.5
347,882 + 0.3
347,904 + 2.8
348,210 - -1.1
348,212 - 0.5
348,312 - -0.3
348,347 + -0.5
348,360 + 0.6
348,384 - -0.2
348,762 + 13648 mRNA_5280 0.16 1.6
348,798 - 13648 mRNA_5280 0.18 0.9
349,032 - 13648 mRNA_5280 0.36 1.4
349,050 + 13648 mRNA_5280 0.37 1.9
349,356 + 13648 mRNA_5280 0.60 1.0
349,657 + 13648 mRNA_5280 0.82 0.2
349,764 + 0.1
349,799 - -0.4
349,802 - 0.0
349,802 + -1.7
349,864 + 0.9
350,002 + -0.1
350,007 + 0.4
350,079 - -1.0
350,110 + 1.7
350,118 + -0.2
350,173 - -1.1
350,177 + 1.2
350,264 - -0.1
350,269 + 0.8
350,269 - -0.9
350,275 - -0.1
350,278 + 0.4
350,283 + 0.3
350,290 - 1.0
350,302 + 0.2
350,430 - 0.4
350,474 + 0.1
350,565 - -0.2
350,647 + -2.0
350,650 - -0.5
350,651 + 0.2