Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5278

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5277: 13645 - Hypothetical Protein, at 340398 to 341217 13645 mRNA_5278: 13646 - KOG1488 Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily), at 341492 to 344533 13646 mRNA_5279: 13647 - KOG2231 Predicted E3 ubiquitin ligase, at 344945 to 347664 13647

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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340,564 - 13645 mRNA_5277 0.20 1.1
340,675 - 13645 mRNA_5277 0.34 1.3
340,723 - 13645 mRNA_5277 0.40 0.1
341,050 - 13645 mRNA_5277 0.80 -0.2
341,117 + 13645 mRNA_5277 0.88 1.8
341,592 - 1.3
341,682 + 0.7
341,972 + 13646 mRNA_5278 0.16 -2.4
342,449 - 13646 mRNA_5278 0.31 -0.4
342,760 - 13646 mRNA_5278 0.42 -1.2
342,902 - 13646 mRNA_5278 0.46 1.4
343,048 - 13646 mRNA_5278 0.51 -0.6
343,459 + 13646 mRNA_5278 0.65 -0.2
343,803 - 13646 mRNA_5278 0.76 1.2
343,937 + 13646 mRNA_5278 0.80 -1.1
344,625 - -0.9
345,398 + 13647 mRNA_5279 0.17 -0.5
345,402 + 13647 mRNA_5279 0.17 0.3
345,512 + 13647 mRNA_5279 0.21 0.4
345,521 - 13647 mRNA_5279 0.21 -0.2