Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5273

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5272: 13640 - K02731 PSMA7 20S proteasome subunit alpha 4, at 330546 to 332091 13640 mRNA_5273: 13641 - K00004 BDH, butB (R,R)-butanediol dehydrogenase / meso-butanediol dehydrogenase / diacetyl reductase, at 332530 to 334206 13641 mRNA_5274: 13642 - KOG0032 Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily, at 334553 to 337184 13642

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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332,275 - 2.9
332,380 - 3.4
332,534 - 0.6
332,644 + 0.7
332,644 - 0.3
332,679 - 0.3
332,740 + 13641 mRNA_5273 0.13 0.7
332,749 + 13641 mRNA_5273 0.13 -2.4
332,849 + 13641 mRNA_5273 0.19 -0.4
333,070 + 13641 mRNA_5273 0.32 -0.3
333,393 - 13641 mRNA_5273 0.51 0.4
333,494 - 13641 mRNA_5273 0.57 1.0
333,675 - 13641 mRNA_5273 0.68 0.1
333,689 + 13641 mRNA_5273 0.69 -3.0
334,097 - 0.6
334,292 - 1.3
334,311 - -2.3
334,345 + -1.0
334,383 - -0.6
334,385 + -0.2
334,432 + -0.6
334,574 - 0.6
334,584 + -0.5
334,590 - 0.5
334,732 - -1.1
334,994 - 13642 mRNA_5274 0.17 0.6