Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5259

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297725 to 299742 13626 mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300162 to 301995 13627 mRNA_5260: 13628 - K02263 COX4 cytochrome c oxidase subunit 4, at 302752 to 303807 13628

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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299,330 + 13626 mRNA_5258 0.80 1.3
299,438 - 13626 mRNA_5258 0.85 -1.0
299,594 + -1.2
299,895 - 0.6
299,921 + 1.2
300,209 + 1.6
300,220 + 1.6
300,237 + 1.3
300,655 - 13627 mRNA_5259 0.27 0.7
300,776 - 13627 mRNA_5259 0.33 0.6
300,803 - 13627 mRNA_5259 0.35 0.0
301,046 + 13627 mRNA_5259 0.48 -2.4
301,179 - 13627 mRNA_5259 0.55 2.2
302,085 - -0.0
302,105 + 2.8
302,126 + 1.1
302,231 - 0.9
302,371 + 2.6
302,378 - -1.6
302,378 + 0.5
302,387 - 1.3
302,389 - 1.7
302,391 + -1.3
302,395 - 1.7
302,399 - 1.5
302,404 - 0.8
302,512 - 1.0
302,549 + 0.6
302,677 + 1.1
302,677 + -0.7
302,680 - -0.7
302,687 - 1.4
302,691 - 1.1
302,694 + 1.4
302,706 + 0.6