Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5258

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5257: 13625 - K11887 PAAF1, RPN14 proteasomal ATPase-associated factor 1, at 295850 to 297525 13625 mRNA_5258: 13626 - KOG0538 Glycolate oxidase, at 297725 to 299742 13626 mRNA_5259: 13627 - K01424 E3.5.1.1, ansA, ansB L-asparaginase, at 300162 to 301995 13627

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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296,951 - 13625 mRNA_5257 0.66 1.3
296,975 + 13625 mRNA_5257 0.67 1.0
297,151 + 13625 mRNA_5257 0.78 0.9
297,423 + -0.1
297,786 + -1.4
297,834 - -0.1
297,842 + 1.3
297,899 + 0.0
298,098 - 13626 mRNA_5258 0.18 1.9
298,128 - 13626 mRNA_5258 0.20 0.2
298,128 - 13626 mRNA_5258 0.20 -1.4
298,239 + 13626 mRNA_5258 0.25 -1.4
298,291 + 13626 mRNA_5258 0.28 -1.2
298,575 - 13626 mRNA_5258 0.42 2.1
298,880 - 13626 mRNA_5258 0.57 0.4
298,995 - 13626 mRNA_5258 0.63 0.2
299,330 + 13626 mRNA_5258 0.80 1.3
299,438 - 13626 mRNA_5258 0.85 -1.0
299,594 + -1.2
299,895 - 0.6
299,921 + 1.2
300,209 + 1.6
300,220 + 1.6
300,237 + 1.3
300,655 - 13627 mRNA_5259 0.27 0.7