Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5254

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5253: 13621 - Hypothetical Protein, at 278991 to 279822 13621 mRNA_5254: 13622 - HMMPfam-10 TM Acyl Transferase domain found in Cas1p-PF07779,HMMPfam-GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p-PF13839, at 280539 to 283748 13622 mRNA_5255: 13623 - K12604 CNOT1, NOT1 CCR4-NOT transcription complex subunit 1, at 284038 to 290339 13623

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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279,552 - 13621 mRNA_5253 0.67 0.1
279,561 - 13621 mRNA_5253 0.69 0.5
279,710 - 13621 mRNA_5253 0.86 -0.6
279,710 - 13621 mRNA_5253 0.86 -0.7
279,719 + 13621 mRNA_5253 0.88 0.2
279,839 - 1.5
279,864 + 1.2
279,872 - -0.4
279,886 + -0.0
279,892 + -1.2
279,893 - 1.4
279,971 + -1.1
280,091 + -2.3
280,107 + -0.1
280,131 + 0.5
280,157 + 0.5
280,324 - 0.8
280,492 + 0.3
280,706 + 0.9
281,199 + 13622 mRNA_5254 0.21 -1.0
281,500 + 13622 mRNA_5254 0.30 1.5
281,646 - 13622 mRNA_5254 0.34 1.4
281,656 + 13622 mRNA_5254 0.35 1.8
283,403 + 13622 mRNA_5254 0.89 0.4
283,680 + 0.8
283,815 - -0.7
283,825 - 2.3
283,826 - -0.5
283,829 + 0.9
283,850 - -0.5
283,855 + 0.3
283,856 - 0.6
283,856 - -1.3
283,857 - 1.7
283,967 - -0.9
283,977 + 1.2
284,133 + -0.6