Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5251

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267361 to 271776 13618 mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271974 to 275743 13619 mRNA_5252: 13620 - BLAST LPS-assembly protein LptD [Rhizoctonia solani], at 276429 to 278610 13620

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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270,977 + 13618 mRNA_5250 0.82 0.8
270,984 + 13618 mRNA_5250 0.82 1.3
270,984 - 13618 mRNA_5250 0.82 0.1
271,053 - 13618 mRNA_5250 0.84 -1.9
271,068 + 13618 mRNA_5250 0.84 0.1
271,239 - 13618 mRNA_5250 0.88 -0.0
271,263 - 13618 mRNA_5250 0.88 1.4
271,270 - 13618 mRNA_5250 0.89 2.2
271,284 - 13618 mRNA_5250 0.89 -0.2
271,286 + 13618 mRNA_5250 0.89 0.3
271,569 - 0.1
271,840 - 0.3
271,842 - 0.4
272,162 - -0.5
272,168 + -0.1
272,667 + 13619 mRNA_5251 0.18 -0.6
275,126 + 13619 mRNA_5251 0.84 -1.1
275,483 - -0.6
275,769 + -1.3
275,775 + 1.1
275,785 + 0.1
275,871 - -0.1
275,949 + -1.7
276,023 + -2.0
276,058 + -0.8
276,115 - -0.8
276,130 - 0.2
276,141 - -0.1
276,152 + 3.0
276,154 - 1.8
276,162 - -0.7
276,176 + 0.2
276,182 + -0.7
276,186 - -0.1
276,187 + 0.0
276,189 + -0.6
276,193 + -0.9
276,205 - -0.2
276,207 - -0.0
276,212 - 0.3
276,225 - 0.1
276,228 + -0.6
276,230 + -0.3
276,338 + -0.3
276,340 - -0.5
276,357 + 0.3
276,381 + -0.1
276,384 + -1.2
276,388 + 3.0
276,507 + 0.1
276,519 - 1.1
276,661 - 13620 mRNA_5252 0.11 0.5