Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5250

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5250: 13618 - SUPERFAMILY--SSF101898, at 267361 to 271776 13618 mRNA_5251: 13619 - K12867 SYF1, XAB2 pre-mRNA-splicing factor SYF1, at 271974 to 275743 13619

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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266,382 + 0.7
266,661 - 0.5
266,663 - 2.2
266,788 + -0.2
266,816 + -0.7
266,927 + -0.1
266,954 - 1.1
267,528 - 1.1
267,559 + -0.1
268,415 - 13618 mRNA_5250 0.24 1.5
268,524 - 13618 mRNA_5250 0.26 0.3
268,722 + 13618 mRNA_5250 0.31 2.1
268,803 + 13618 mRNA_5250 0.33 0.1
269,110 - 13618 mRNA_5250 0.40 -0.8
269,204 + 13618 mRNA_5250 0.42 1.4
269,206 - 13618 mRNA_5250 0.42 -2.3
269,618 - 13618 mRNA_5250 0.51 1.6
269,646 - 13618 mRNA_5250 0.52 0.5
269,651 + 13618 mRNA_5250 0.52 0.6
269,812 - 13618 mRNA_5250 0.56 -0.1
270,067 + 13618 mRNA_5250 0.61 -0.8
270,439 + 13618 mRNA_5250 0.70 1.1
270,506 - 13618 mRNA_5250 0.71 -0.5
270,686 - 13618 mRNA_5250 0.75 0.7
270,956 - 13618 mRNA_5250 0.81 0.1
270,977 + 13618 mRNA_5250 0.82 0.8
270,984 + 13618 mRNA_5250 0.82 1.3
270,984 - 13618 mRNA_5250 0.82 0.1
271,053 - 13618 mRNA_5250 0.84 -1.9
271,068 + 13618 mRNA_5250 0.84 0.1
271,239 - 13618 mRNA_5250 0.88 -0.0
271,263 - 13618 mRNA_5250 0.88 1.4
271,270 - 13618 mRNA_5250 0.89 2.2
271,284 - 13618 mRNA_5250 0.89 -0.2
271,286 + 13618 mRNA_5250 0.89 0.3
271,569 - 0.1
271,840 - 0.3
271,842 - 0.4
272,162 - -0.5
272,168 + -0.1
272,667 + 13619 mRNA_5251 0.18 -0.6