Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5241

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5240: 13608 - HMMPfam-Ubiquinol-cytochrome-c reductase complex subunit (QCR10)-PF09796, at 238020 to 238702 13608 mRNA_5241: 13609 - K01099 INPP5B_F inositol polyphosphate 5-phosphatase INPP5B/F, at 238987 to 242229 13609

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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238,003 + 1.2
238,018 - 0.9
238,068 - 1.2
238,073 - 0.6
238,221 + 13608 mRNA_5240 0.29 0.9
238,228 - 13608 mRNA_5240 0.30 -1.0
238,509 - 13608 mRNA_5240 0.72 0.9
238,527 + 13608 mRNA_5240 0.74 0.8
238,664 - 1.8
238,668 - 1.2
238,817 - 0.2
238,953 + -0.3
238,967 + -0.6
239,076 - -1.3
239,271 + 1.0
239,603 - 13609 mRNA_5241 0.19 0.4
239,679 + 13609 mRNA_5241 0.21 1.2
239,899 - 13609 mRNA_5241 0.28 0.6
239,905 - 13609 mRNA_5241 0.28 -1.5
239,906 + 13609 mRNA_5241 0.28 -0.2
240,096 + 13609 mRNA_5241 0.34 0.9
240,198 - 13609 mRNA_5241 0.37 1.8
240,560 + 13609 mRNA_5241 0.49 -0.2
240,713 + 13609 mRNA_5241 0.53 -0.8
240,753 - 13609 mRNA_5241 0.54 -0.2
240,846 + 13609 mRNA_5241 0.57 0.4
240,983 - 13609 mRNA_5241 0.62 -0.8
242,735 - 0.5
242,741 - 0.1
242,872 + -1.8
242,874 + 1.2
242,876 + -1.6
242,877 - 1.9
242,888 + 0.2
242,900 - -1.1
243,004 - -1.7
243,013 + 2.2
243,033 - 0.1
243,045 + -0.5
243,049 - 0.0
243,052 + 0.9