Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5230

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5230: 13598 - K17906 ATG2 autophagy-related protein 2, at 209416 to 215994 13598 mRNA_5231: 13599 - Hypothetical Protein, at 216501 to 218178 13599

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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208,778 + -1.4
208,793 + 1.9
208,812 + -0.3
208,922 - 0.1
208,964 + 1.5
209,051 + 1.3
209,071 + 1.6
209,076 + -2.2
209,085 + -0.0
209,219 + 0.2
209,327 + 0.6
209,389 - 0.6
209,418 + -0.2
209,521 - 0.6
209,764 - 0.2
209,785 - -1.9
209,790 - 1.4
209,821 - 0.5
209,908 + -1.1
209,932 + 1.7
209,950 - 0.2
209,988 - 1.4
210,057 - 0.2
210,073 + 0.4
210,125 + 13598 mRNA_5230 0.11 -0.2
210,467 + 13598 mRNA_5230 0.16 1.2
210,659 - 13598 mRNA_5230 0.19 -0.4
210,674 - 13598 mRNA_5230 0.19 -0.3
210,725 - 13598 mRNA_5230 0.20 0.7
210,768 + 13598 mRNA_5230 0.21 1.0
210,878 + 13598 mRNA_5230 0.22 -1.1
211,094 - 13598 mRNA_5230 0.26 2.1
211,098 + 13598 mRNA_5230 0.26 0.6
211,533 + 13598 mRNA_5230 0.32 1.1
211,624 + 13598 mRNA_5230 0.34 0.5
211,629 - 13598 mRNA_5230 0.34 0.7
211,728 - 13598 mRNA_5230 0.35 -1.6
211,939 - 13598 mRNA_5230 0.38 -0.2
211,942 + 13598 mRNA_5230 0.38 1.4
212,045 + 13598 mRNA_5230 0.40 -0.4
212,077 + 13598 mRNA_5230 0.40 1.9
212,209 + 13598 mRNA_5230 0.42 1.1
212,508 + 13598 mRNA_5230 0.47 -0.1
212,536 + 13598 mRNA_5230 0.47 0.8
212,848 - 13598 mRNA_5230 0.52 2.5
212,910 - 13598 mRNA_5230 0.53 2.2
213,045 + 13598 mRNA_5230 0.55 -0.9
213,103 - 13598 mRNA_5230 0.56 2.7
213,375 + 13598 mRNA_5230 0.60 -0.0
213,384 - 13598 mRNA_5230 0.60 0.5
213,768 + 13598 mRNA_5230 0.66 0.7
213,795 + 13598 mRNA_5230 0.67 0.6
213,906 + 13598 mRNA_5230 0.68 0.7
214,375 + 13598 mRNA_5230 0.75 1.4
214,906 + 13598 mRNA_5230 0.83 1.0
214,937 + 13598 mRNA_5230 0.84 0.4
215,355 - 0.6
215,380 - 0.8
215,386 + 0.5
215,573 + 1.2
215,649 + -2.2
215,652 - 0.3
215,807 + 1.8
215,920 + 0.8
215,947 + 1.7
215,952 - 3.5
215,976 + 1.6
216,104 - 0.8
216,216 - -0.9
216,296 + 1.4
216,375 - 1.6
216,378 + 0.7
216,423 + 1.5
216,429 - 2.2
216,579 + 2.3
216,673 + 13599 mRNA_5231 0.10 0.3
216,705 - 13599 mRNA_5231 0.12 0.6
216,812 + 13599 mRNA_5231 0.19 2.4